Browse Element(s) Details


Os.37812.1.S1_s_at

Description gb:AK065933.1
DB_XREF= gi:32975951
TID=Os.37812.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.37812 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013043K17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013043K17, full insert sequence.
FL= gb:AK065933.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4059011/11pg1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g40550Os.5625.1.S1_at11/1111+23690789..23693913Receptor kinase, putative, expressed
LOC_Os11g40560OsAffx.19276.1.S1_s_at10/1111+23702300..23703058hypothetical protein
LOC_Os11g40564NANA11+23707094..23708191hypothetical protein
LOC_Os11g40570Os.24003.2.S1_x_at11/1111+23709332..23713269Plant viral-response family protein, expressed
LOC_Os11g40590Os.37812.1.S1_s_at11/1111+23716755..23723090pg1, putative, expressed
LOC_Os11g40590OsAffx.31408.1.S1_x_at11/1111+23716755..23723090pg1, putative, expressed
LOC_Os11g40600Os.49710.1.S1_at10/1111+23725097..23726489expressed protein
LOC_Os11g40610Os.26978.1.S1_a_at11/1111+23729086..23732131early flowering 4, putative, expressed
LOC_Os11g40620NANA11+23746080..23746340hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37812.1.S1_s_at--711--3331Chr11:23719844..23719868 (25 bp)
CACTGTCCCAGTGAAGGCTCAGCAG
LOC_Os11g40590
Os.37812.1.S1_s_at--141--2951Chr11:23719831..23719855 (25 bp)
AAGGCTCAGCAGGTTCTTAGCATGA
LOC_Os11g40590
Os.37812.1.S1_s_at--659--5011Chr11:23719823..23719847 (25 bp)
GCAGGTTCTTAGCATGATCAGGACA
LOC_Os11g40590
Os.37812.1.S1_s_at--244--411Chr11:23719807..23719831 (25 bp)
ATCAGGACAGAACCTTTCTCTCTTA
LOC_Os11g40590
Os.37812.1.S1_s_at--182--3771Chr11:23719790..23719814 (25 bp)
CTCTCTTAAGAGTTTTCTGTCACCG
LOC_Os11g40590
Os.37812.1.S1_s_at--130--10311Chr11:23719777..23719801 (25 bp)
TTTCTGTCACCGAATTCCATCAAGG
LOC_Os11g40590
Os.37812.1.S1_s_at--139--1611Chr11:23719741..23719765 (25 bp)
AGCTGCTGGACTCACTTTGTGTATG
LOC_Os11g40590
Os.37812.1.S1_s_at--910--51Chr11:23719716..23719740 (25 bp)
ATTGCAATACTGAACTTATCCGTCT
LOC_Os11g40590
Os.37812.1.S1_s_at--457--5471Chr11:23719706..23719729 (24 bp)
GAACTTATCCGTCTTCAAATTAGGG
LOC_Os11g40590
Os.37812.1.S1_s_at--1129--2331Chr11:23719316..23719340 (25 bp)
AAAGAACGGCATGGTTGTCGCTCGG
LOC_Os11g40590
Os.37812.1.S1_s_at--515--9791Chr11:23719253..23719277 (25 bp)
TAAGCTAGCAGAGTTCGTGGACAAC
LOC_Os11g40590
Target Sequence 
CACTGTCCCAGTGAAGGCTCAGCAGGTTCTTAGCATGATCAGGACAGAACCTTTCTCTCTTAAGAGTTTTCTGTCACCGA
ATTCCATCAAGGATCAAAAGATGAGCTGCTGGACTCACTTTGTGTATGATTGCAATACTGAACTTATCCGTCTTCAAATT
AGGGATCAGAAGGCAAAGAACGGCATGGTTGTCGCTCGGGAGTTGGTCGGAGTAACAAAGTCATCAAAGNAACCATTTAA
GCTAGCAGAGTTCGTGGACAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37812.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis