Browse Element(s) Details


Os.37867.1.S1_at

Description gb:AK064140.1
DB_XREF= gi:32974158
TID=Os.37867.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.37867 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0456A01.20 (P0456A01.20), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-103-A10, full insert sequence.
FL= gb:AK064140.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5289011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g52830Os.941.1.S1_at11/111+30713755..30714721secreted protein, putative, expressed
LOC_Os01g52840Os.34131.1.S1_s_at10/111+30716516..30718652hAT family dimerisation domain containing protein
LOC_Os01g52850NANA1+30719608..30720030hypothetical protein
LOC_Os01g52864Os.942.1.S1_at11/111+30725792..30732331integral membrane family protein, putative, expressed
LOC_Os01g52864OsAffx.2320.1.S1_at7/111+30725792..30732331integral membrane family protein, putative, expressed
LOC_Os01g52864Os.53962.1.S1_at1/111+30725792..30732331integral membrane family protein, putative, expressed
LOC_Os01g52880OsAffx.2321.2.S1_s_at11/111+30733907..30735353Leucine Rich Repeat family protein, expressed
LOC_Os01g52890Os.37867.1.S1_at11/111+30739675..30740422expressed protein
LOC_Os01g52900Os.28903.1.S1_at11/111+30740541..30742654aminotransferase, putative, expressed
LOC_Os01g52910NANA1+30748903..30749235hypothetical protein
LOC_Os01g52920Os.15402.1.S1_at11/111+30753777..30758934expressed protein
LOC_Os01g52920Os.15402.2.S1_at1/111+30753777..30758934expressed protein
LOC_Os01g52920Os.15402.4.S1_at1/111+30753777..30758934expressed protein
LOC_Os01g52930NANA1+30760880..30764172retrotransposon protein, putative, unclassified
LOC_Os01g52940NANA1+30765251..30767695retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37867.1.S1_at--443--9331Chr01:30740244..30740268 (25 bp)
TCGCCATGGGCAAGTCCAGATCCGG
LOC_Os01g52890
Os.37867.1.S1_at--598--891Chr01:30740040..30740064 (25 bp)
AGGCGCTCGATGACATGTGCTTTGG
LOC_Os01g52890
Os.37867.1.S1_at--458--9151Chr01:30739995..30740019 (25 bp)
TGCCCAACCAGGTGTTCTCTTGCGA
LOC_Os01g52890
Os.37867.1.S1_at--81--8951Chr01:30739936..30739960 (25 bp)
TGACGATGCAGCCTAGGCGGCCACT
LOC_Os01g52890
Os.37867.1.S1_at--1032--9111Chr01:30739912..30739936 (25 bp)
TGCTGTCGTCTTGCTCGCGATTAAT
LOC_Os01g52890
Os.37867.1.S1_at--713--9291Chr01:30739898..30739922 (25 bp)
TCGCGATTAATCTGTTGTACCCTCT
LOC_Os01g52890
Os.37867.1.S1_at--464--4191Chr01:30739871..30739895 (25 bp)
CCCTCTGTTCTCGTTGGATTTGAGA
LOC_Os01g52890
Os.37867.1.S1_at--313--1431Chr01:30739841..30739865 (25 bp)
AGAACTACTGTTTCCTGGTGTTAAG
LOC_Os01g52890
Os.37867.1.S1_at--928--2831Chr01:30739819..30739843 (25 bp)
AAGTACTCCAGATCCTTGGATGCCA
LOC_Os01g52890
Os.37867.1.S1_at--119--591Chr01:30739800..30739824 (25 bp)
ATGCCACATAGACGATTTTCCACTC
LOC_Os01g52890
Os.37867.1.S1_at--543--472Chr08:8889474..8889597 (25 bp)
ATCTGCCGATCGATTTTATTGATTG
NONE
Target Sequence 
TCGCCATGGGCAAGTCCAGATCCGGGGTGCTGCTGGCGCTGCTCCTGGTCTGCGCCGCGGTGGCGGNGNCGGCGGCTGCT
GCCGTACCGGGCAGCAAGGGGAAGGGCGGGGCGGGTCGGGCGGAGGTGGCGTGCTCGGATCTGGCGACGCGGGGGGAGTG
CGTGGCGAGCGGCGGCGGGAGCAGGTGCCGGTGGTGCCGCAGCGAGGCGCTCGATGACATGTGCTTTGGGGCCGCCGAGG
CGTGGAGGCTGCCCAACCAGGTGTTCTCTTGCGACCCGCCCGCCGGCGGCGTCGCCCACGCCCGGAGATGACGATGCAGC
CTAGGCGGCCACTGCTGTCGTCTTGCTCGCGATTAATCTGTTGTACCCTCTCCCCCTCTGTTCTCGTTGGATTTGAGAAT
TTAAGAACTACTGTTTCCTGGTGTTAAGTACTCCAGATCCTTGGATGCCACATAGACGATTTTCCACTCTACTTTTCTGT
AATGTATGTTTTGATCAGAAATCTGCCGATCGATTTTATTGATTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37867.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis