Browse Element(s) Details


Os.37931.1.S1_at

Description gb:U77296.1
DB_XREF= gi:1667591
TID=Os.37931.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.37931 (NCBI UniGene Cluster)
DEF=Oryza sativa histone 3 mRNA, complete cds.
PROD=histone 3
FL= gb:U77296.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0573011/11Histone H3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g05690OsAffx.31606.1.S1_x_at11/1111+2592696..2598360Amino acid permease family protein, expressed
LOC_Os11g05700Os.6118.1.S1_at11/1111+2601649..2610012ABC transporter family protein, expressed
LOC_Os11g05710OsAffx.30832.1.S1_at11/1111+2614264..2616447hypothetical protein
LOC_Os11g05720NANA11+2616909..2619497retrotransposon protein, putative, unclassified
LOC_Os11g05730Os.37931.1.S1_at11/1111+2621575..2622185Histone H3, putative, expressed
LOC_Os11g05740Os.53019.1.S1_at11/1111+2627613..2629467B3 DNA binding domain containing protein, expressed
LOC_Os11g05750OsAffx.7007.1.S1_at11/1111+2633341..2635005hypothetical protein
LOC_Os11g05760Os.53800.1.S1_at11/1111+2636539..2642204Serine carboxypeptidase S28 family protein, expressed
LOC_Os11g05760Os.53962.1.S1_at1/1111+2636539..2642204Serine carboxypeptidase S28 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37931.1.S1_at--984--9471Chr11:2621675..2621699 (25 bp)
TCTGATCGCTTCATCGTTCTCAGCT
LOC_Os11g05730
Os.37931.1.S1_at--835--8851Chr11:2621673..2621697 (25 bp)
TGATCGCTTCATCGTTCTCAGCTAC
LOC_Os11g05730
Os.37931.1.S1_at--1021--511Chr11:2621671..2621695 (25 bp)
ATCGCTTCATCGTTCTCAGCTACCT
LOC_Os11g05730
Os.37931.1.S1_at--170--1531Chr11:2621654..2621678 (25 bp)
AGCTACCTCTTCCTAGTAGAACCAG
LOC_Os11g05730
Os.37931.1.S1_at--903--4851Chr11:2621653..2621677 (25 bp)
GCTACCTCTTCCTAGTAGAACCAGG
LOC_Os11g05730
Os.37931.1.S1_at--768--9971Chr11:2621651..2621675 (25 bp)
TACCTCTTCCTAGTAGAACCAGGAT
LOC_Os11g05730
Os.37931.1.S1_at--723--1751Chr11:2621650..2621674 (25 bp)
ACCTCTTCCTAGTAGAACCAGGATG
LOC_Os11g05730
Os.37931.1.S1_at--31--3751Chr11:2621648..2621672 (25 bp)
CTCTTCCTAGTAGAACCAGGATGTA
LOC_Os11g05730
Os.37931.1.S1_at--769--3631Chr11:2621646..2621670 (25 bp)
CTTCCTAGTAGAACCAGGATGTACT
LOC_Os11g05730
Os.37931.1.S1_at--546--4811Chr11:2621639..2621663 (25 bp)
GTAGAACCAGGATGTACTAGTAGTA
LOC_Os11g05730
Os.37931.1.S1_at--363--9971Chr11:2621638..2621662 (25 bp)
TAGAACCAGGATGTACTAGTAGTAG
LOC_Os11g05730
Target Sequence 
TCTGATCGCTTCATCGTTCTCAGCTACCTCTTCCTAGTAGAACCAGGATGTACTAGTAGTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37931.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis