Browse Element(s) Details


Os.37997.1.S1_s_at

Description gb:AK063770.1
DB_XREF= gi:32973788
TID=Os.37997.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=5
UG=Os.37997 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-121-B11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-121-B11, full insert sequence.
FL= gb:AK063770.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0627011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g06180NANA1+2941800..2944537transposon protein, putative, unclassified
LOC_Os01g06200NANA1+2946899..2949815retrotransposon protein, putative, unclassified
LOC_Os01g06210Os.1899.1.S1_at1/111+2951316..2952306PrMC3, putative
LOC_Os01g06220Os.33885.1.S1_at11/111+2953968..2955241PrMC3, putative, expressed
LOC_Os01g06230NANA1+2957996..2958271Auxin responsive protein
LOC_Os01g06240OsAffx.23133.1.S1_at11/111+2959224..2961719D-mannose binding lectin family protein, expressed
LOC_Os01g06250OsAffx.10935.1.S1_x_at11/111+2963126..2964148Dirigent-like protein
LOC_Os01g06250OsAffx.10935.1.S1_at11/111+2963126..2964148Dirigent-like protein
LOC_Os01g06260OsAffx.10558.2.S1_s_at11/111+2965956..2967533hypothetical protein
LOC_Os01g06260OsAffx.10558.2.S1_at11/111+2965956..2967533hypothetical protein
LOC_Os01g06260OsAffx.10558.1.S1_x_at9/111+2965956..2967533hypothetical protein
LOC_Os01g06260OsAffx.10558.1.S1_at5/111+2965956..2967533hypothetical protein
LOC_Os01g06270Os.19218.1.S1_x_at11/111+2967932..2976115expressed protein
LOC_Os01g06270Os.37997.1.S1_s_at11/111+2967932..2976115expressed protein
LOC_Os01g06270OsAffx.10936.1.S1_x_at10/111+2967932..2976115expressed protein
LOC_Os01g06280Os.33613.1.S1_at11/111+2979344..2982962Protein kinase domain containing protein, expressed
LOC_Os01g06290Os.18216.2.S1_x_at11/111+2983116..2986082RNA recognition motif family protein, expressed
LOC_Os01g06290Os.18216.1.S1_at10/111+2983116..2986082RNA recognition motif family protein, expressed
LOC_Os01g06300Os.14919.1.S1_at3/111+2988199..2994119transposon protein, putative, Mutator sub-class
LOC_Os01g06300OsAffx.29313.1.S1_at1/111+2988199..2994119transposon protein, putative, Mutator sub-class
LOC_Os01g06310Os.6389.1.S1_at11/111+2996395..2997985expressed protein
LOC_Os01g06320Os.31652.1.S1_at11/111+3000662..3002530myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os01g06320Os.31652.2.S1_x_at10/111+3000662..3002530myb-like DNA-binding domain, SHAQKYF class family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37997.1.S1_s_at--347--9771Chr01:2968142..2968166 (25 bp)
TAATGACTGCATGTTACCCACTTCG
LOC_Os01g06270
Os.37997.1.S1_s_at--1080--731Chr01:2968132..2968156 (25 bp)
ATGTTACCCACTTCGCCGTGTTCTG
LOC_Os01g06270
Os.37997.1.S1_s_at--577--8791Chr01:2968114..2968138 (25 bp)
TGTTCTGGCTCTACCCGCAGTTGTA
LOC_Os01g06270
Os.37997.1.S1_s_at--1083--8471Chr01:2968109..2968133 (25 bp)
TGGCTCTACCCGCAGTTGTATAGTT
LOC_Os01g06270
Os.37997.1.S1_s_at--144--3771Chr01:2968106..2968130 (25 bp)
CTCTACCCGCAGTTGTATAGTTGAA
LOC_Os01g06270
Os.37997.1.S1_s_at--783--4191Chr01:2968101..2968125 (25 bp)
CCCGCAGTTGTATAGTTGAATGTAT
LOC_Os01g06270
Os.37997.1.S1_s_at--543--10831Chr01:2968050..2968074 (25 bp)
TTGTGTTACTGTATGAATGCACCCA
LOC_Os01g06270
Os.37997.1.S1_s_at--176--6771Chr01:2968046..2968070 (25 bp)
GTTACTGTATGAATGCACCCAAGTT
LOC_Os01g06270
Os.37997.1.S1_s_at--960--651Chr01:2968038..2968062 (25 bp)
ATGAATGCACCCAAGTTAACAAGGA
LOC_Os01g06270
Os.37997.1.S1_s_at--586--9031Chr01:2968033..2968057 (25 bp)
TGCACCCAAGTTAACAAGGAATTCC
LOC_Os01g06270
Os.37997.1.S1_s_at--190--9811Chr01:2968022..2968046 (25 bp)
TAACAAGGAATTCCCTATTTGTTTG
LOC_Os01g06270
Target Sequence 
TAATGACTGCATGTTACCCACTTCGCCGTGTTCTGGCTCTACCCGCAGTTGTATAGTTGAATGTATAGAACTTTCTATTG
TGTTCATTGATNTTGTGTTACTGTATGAATGCACCCAAGTTAACAAGGAATTCCCTATTTGTTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37997.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis