Browse Element(s) Details


Os.38192.1.S1_at

Description gb:AK102293.1
DB_XREF= gi:32987502
TID=Os.38192.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.38192 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033089L01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033089L01, full insert sequence.
FL= gb:AK102293.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1416010/11Polygalacturonase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g14110OsAffx.28408.2.S1_at11/117+8052066..8053836Myb-like DNA-binding domain containing protein
LOC_Os07g14120OsAffx.16255.1.S1_at11/117+8057234..8058666agmatine coumaroyltransferase, putative
LOC_Os07g14120OsAffx.16255.1.S1_x_at11/117+8057234..8058666agmatine coumaroyltransferase, putative
LOC_Os07g14120OsAffx.31441.1.S1_x_at3/117+8057234..8058666agmatine coumaroyltransferase, putative
LOC_Os07g14130OsAffx.16256.1.S1_at11/117+8062127..8062717pectinesterase inhibitor domain containing protein
LOC_Os07g14140OsAffx.5327.1.S1_at11/117+8063511..8064524hypothetical protein
LOC_Os07g14150Os.23405.1.S1_at11/117+8073942..8076504Guanine deaminase, putative, expressed
LOC_Os07g14160Os.38192.1.S1_at10/117+8077213..8081104Polygalacturonase family protein, expressed
LOC_Os07g14170NANA7+8088044..8088712hypothetical protein
LOC_Os07g14180NANA7+8089681..8090058hypothetical protein
LOC_Os07g14190NANA7+8092940..8093635retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g14200OsAffx.1197.1.S1_x_at2/117+8095416..8095787retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g14200OsAffx.10020.1.S1_x_at1/117+8095416..8095787retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g14210OsAffx.20387.1.S1_x_at1/117+8096855..8099353retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g14220NANA7+8100619..8103536retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g14230NANA7+8104683..8107054retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0005975biological_processcarbohydrate metabolism
GO:0004650molecular_functionpolygalacturonase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38192.1.S1_at--1097--7611Chr07:8077840..8077864 (25 bp)
GGGAACATCCTGACGACAACTATGA
LOC_Os07g14160
Os.38192.1.S1_at--344--5271Chr07:8077812..8077836 (25 bp)
GAATGCGCTTCCAGTCATTAGCAAC
LOC_Os07g14160
Os.38192.1.S1_at--755--10271Chr07:8077705..8077729 (25 bp)
TTTGCTTATCAAATGTGTCCCTCAG
LOC_Os07g14160
Os.38192.1.S1_at--995--7451Chr07:8077691..8077715 (25 bp)
GTGTCCCTCAGTAGCAAATCTGCTG
LOC_Os07g14160
Os.38192.1.S1_at--425--6371Chr07:8077667..8077691 (25 bp)
GATCCTTGGAATTGTTCGCTCATCG
LOC_Os07g14160
Os.38192.1.S1_at--379--2891Chr07:8077642..8077666 (25 bp)
AAGGGTTCTCAAATTCTGTAGCTCC
LOC_Os07g14160
Os.38192.1.S1_at--683--271NONE
ATATGTGAGCAACTTTGGCCCAGCC
NONE
Os.38192.1.S1_at--355--8651Chr07:8077587..8077611 (25 bp)
TGGGCCAGGCCAAGTATGCTATGAT
LOC_Os07g14160
Os.38192.1.S1_at--102--10171Chr07:8077474..8077498 (25 bp)
TATACAGTTAGACGCCCCAATCATC
LOC_Os07g14160
Os.38192.1.S1_at--336--5371Chr07:8077405..8077429 (25 bp)
GAAGACTTCCAATTTTGCCTTAAGG
LOC_Os07g14160
Os.38192.1.S1_at--965--9771Chr07:8077385..8077409 (25 bp)
TAAGGCTTGCCTTGTGTAGTCGTGT
LOC_Os07g14160
Target Sequence 
GGGAACATCCTGACGACAACTATGACAAGAATGCGCTTCCAGTCATTAGCAACATAACGATAAAAAATGTGGTGGGGGTA
AACATTGGTACTGCAGGAATGTTGCTGGGCATCCAGGGGGATATCTTTAGCAACATTTGCTTATCAAATGTGTCCCTCAG
TAGCAAATCTGCTGATCCTTGGAATTGTTCGCTCATCGAAGGGTTCTCAAATTCTGTAGCTCCTGAGATATGTGAGCAAC
TTTGGCCCAGCCCTGGGCCAGGCCAAGTATGCTATGATGGTAATAGCTACCCAGTGCCAGCAGCACAGCAGCCATATAAG
TCGGGCGCTACCCGGTTACAAAATCCTTTCCTCAAGTTCATTTCTCTATACAGTTAGACGCCCCAATCATCAACTATGTC
CTTGTAGATTTTTATTTTTGGTGCAAGTGATTGTTGAAGACTTCCAATTTTGCCTTAAGGCTTGCCTTGTGTAGTCGTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38192.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis