Browse Element(s) Details


Os.38205.1.S1_at

Description gb:AK061235.1
DB_XREF= gi:32971253
TID=Os.38205.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.38205 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0415A04.10 (P0415A04.10), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-211-B06, full insert sequence.
FL= gb:AK061235.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5771011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g57660OsAffx.23827.1.S1_x_at11/111+33668491..33668869hypothetical protein
LOC_Os01g57660OsAffx.23827.1.S1_at11/111+33668491..33668869hypothetical protein
LOC_Os01g57670OsAffx.9512.1.S1_x_at11/111+33670503..33673718transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g57670OsAffx.9512.1.S1_at10/111+33670503..33673718transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g57670OsAffx.8455.1.S1_at2/111+33670503..33673718transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g57670OsAffx.12338.1.S1_at1/111+33670503..33673718transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g57680NANA1+33674791..33675153hypothetical protein
LOC_Os01g57690OsAffx.9390.1.S1_at11/111+33677093..33677974Plastocyanin-like domain containing protein, expressed
LOC_Os01g57700OsAffx.23829.1.S1_at4/111+33686340..33688642expressed protein
LOC_Os01g57710Os.38205.1.S1_at11/111+33691225..33694212expressed protein
LOC_Os01g57720Os.22812.1.S1_a_at11/111+33695829..33701469expressed protein
LOC_Os01g57730Os.49540.1.A1_x_at11/111+33709276..33711335Peroxidase family protein, expressed
LOC_Os01g57730Os.33106.1.S1_at10/111+33709276..33711335Peroxidase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38205.1.S1_at--385--4491Chr01:33692011..33692035 (25 bp)
GCCGTGGCTTTCACAGCTTATATTA
LOC_Os01g57710
Os.38205.1.S1_at--403--3711Chr01:33691834..33691858 (25 bp)
CTAAAATGGATACCTTGCCCACGCT
LOC_Os01g57710
Os.38205.1.S1_at--528--7631Chr01:33691752..33691776 (25 bp)
GGGAGGCCTACTTCTGAACCCTGTT
LOC_Os01g57710
Os.38205.1.S1_at--141--831Chr01:33691512..33691536 (25 bp)
ATGGTTCAGTTCATCCTGCTAGGCA
LOC_Os01g57710
Os.38205.1.S1_at--1159--5951Chr01:33691475..33691499 (25 bp)
GAGAAGCTTCTGTTTACGCAGGGAT
LOC_Os01g57710
Os.38205.1.S1_at--625--9951Chr01:33691461..33691485 (25 bp)
TACGCAGGGATCTGCTTTGTTGCTT
LOC_Os01g57710
Os.38205.1.S1_at--739--6391Chr01:33691378..33691402 (25 bp)
GATCGTGTTCTTGGTAACTGGCATC
LOC_Os01g57710
Os.38205.1.S1_at--633--9811Chr01:33691364..33691388 (25 bp)
TAACTGGCATCATGGCGGTCAGCAC
LOC_Os01g57710
Os.38205.1.S1_at--105--9611Chr01:33691334..33691358 (25 bp)
TCATCACCTTCTTCGGAGCATTGGA
LOC_Os01g57710
Os.38205.1.S1_at--12--2031Chr01:33691293..33691317 (25 bp)
ACTAGTGGAGCTTACATGGGTTTCA
LOC_Os01g57710
Os.38205.1.S1_at--57--7691Chr01:33691276..33691300 (25 bp)
GGGTTTCAAGTTACCTTGCTGACAT
LOC_Os01g57710
Target Sequence 
GCCGTGGCTTTCACAGCTTATATTATATACGCGAAGAGGAAGAAACAAGTTCTGCATAATCAAGAAGATGGCAAGGCAAA
TCCGGAGAGCACTAAAATGGATACCTTGCCCACGCTNTCTNATTNCCCACTGGCTGCTTTTGTNCACCGGTGCTCTGAGC
GGCNCTCTTTGGCATTGGGGGAGGCCTACTTCTGAACCCTGTTCTTCTTCAGATTGGAATACCANCNCGCAGACTGCAGC
AGCGACGTCTTCGTTTANTGGTCCTTTTCTGCGCATCCATGTCGATGGTTCAGTTCATCCTGCTAGGCATGCAAGGCATC
GGAGAAGCTTCTGTTTACGCAGGGATCTGCTTTGTTGCTTCNGNTTGTTGGAGCGGTGGTGATTGAGCGAGCTATCAGGA
AGTCCGGGAGGGTGTCGCTGATCGTGTTCTTGGTAACTGGCATCATGGCGGTCAGCACCGTGATCATCACCTTCTTCGGA
GCATTGGATGTATGGGCGCAGTATACTAGTGGAGCTTACATGGGTTTCAAGTTACCTTGCTGACAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38205.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis