Browse Element(s) Details


Os.38230.1.S1_at

Description gb:AK062068.1
DB_XREF= gi:32972086
TID=Os.38230.1
CNT=170
FEA=FLmRNA
TIER=FL+Stack
STK=53
UG=Os.38230 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013002I02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-044-E01, full insert sequence.
FL= gb:AK062068.1 gb:AK065237.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5730011/11phosphatidylinositol 3- and 4-kinase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g57220Os.22723.1.S1_a_at11/114+33868683..33871611Ubiquitin-conjugating enzyme E2-17 kDa, putative, expressed
LOC_Os04g57220Os.22723.3.S1_x_at5/114+33868683..33871611Ubiquitin-conjugating enzyme E2-17 kDa, putative, expressed
LOC_Os04g57230Os.20204.4.S1_at11/114+33872604..33876347regulatory protein RecX containing protein, expressed
LOC_Os04g57230Os.5935.1.S1_at11/114+33872604..33876347regulatory protein RecX containing protein, expressed
LOC_Os04g57240Os.51414.1.S1_at4/114+33876674..33877784hypothetical protein
LOC_Os04g57250OsAffx.23181.1.S1_x_at11/114+33879770..33880396hypothetical protein
LOC_Os04g57260Os.12273.1.S1_at1/114+33882989..33883390expressed protein
LOC_Os04g57270Os.12273.1.S1_at11/114+33885403..33885908expressed protein
LOC_Os04g57280Os.12275.1.S1_at11/114+33887578..33888100expressed protein
LOC_Os04g57290Os.27287.1.S1_at11/114+33891420..33893101F-box domain containing protein, expressed
LOC_Os04g57300Os.38230.1.S1_at11/114+33895065..33897846phosphatidylinositol 3- and 4-kinase family protein, putative, expressed
LOC_Os04g57310Os.15283.1.S1_at11/114+33900474..33904540Uncharacterized conserved protein, putative, expressed
LOC_Os04g57320Os.25587.1.S1_s_at10/114+33903833..33906854Immutans protein, putative, expressed
LOC_Os04g57320Os.25587.1.S1_at9/114+33903833..33906854Immutans protein, putative, expressed
LOC_Os04g57320Os.25587.3.S1_x_at6/114+33903833..33906854Immutans protein, putative, expressed
LOC_Os04g57330Os.13987.1.S1_at11/114+33908934..33912073expressed protein
LOC_Os04g57340NANA4+33914656..33915517AP2 domain containing protein, expressed
LOC_Os04g57350Os.18279.1.S1_at11/114+33919168..33923078EH-domain containing protein 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004428molecular_functioninositol or phosphatidylinositol kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38230.1.S1_at--610--7351Chr04:33895801..33895825 (25 bp)
GTGAATCTTCCAAGCGTTCATCGGA
LOC_Os04g57300
Os.38230.1.S1_at--243--10551Chr04:33895785..33895809 (25 bp)
TTCATCGGAGCGTGTCCATTCTGGA
LOC_Os04g57300
Os.38230.1.S1_at--779--3391Chr04:33895769..33895793 (25 bp)
CATTCTGGAGGGTTGAAGTTCCCCA
LOC_Os04g57300
Os.38230.1.S1_at--413--2671Chr04:33895735..33895759 (25 bp)
AATCCAGCGGTTCTAACGGCAGTGT
LOC_Os04g57300
Os.38230.1.S1_at--48--3471Chr04:33895716..33895740 (25 bp)
CAGTGTGCATGCTCTGAACAGGAGT
LOC_Os04g57300
Os.38230.1.S1_at--671--6111Chr04:33895695..33895719 (25 bp)
GAGTGCAGACGAACAGCTTCCATCA
LOC_Os04g57300
Os.38230.1.S1_at--1064--3211Chr04:33895672..33895696 (25 bp)
CAAGTGTATACTTCGTCAGGCTGTC
LOC_Os04g57300
Os.38230.1.S1_at--797--7591Chr04:33895536..33895560 (25 bp)
GGGCACTTCCTGCAAGTTTTGAGTA
LOC_Os04g57300
Os.38230.1.S1_at--181--6091Chr04:33895516..33895540 (25 bp)
GAGTAGGACCATAGAGCAGCAGAGA
LOC_Os04g57300
Os.38230.1.S1_at--365--9771Chr04:33895479..33895503 (25 bp)
TAATGCTTGCTACTTGTGTTGCTTA
LOC_Os04g57300
Os.38230.1.S1_at--833--591Chr04:33895412..33895436 (25 bp)
ATGCCTACAGCTTTGTGCAATGTTG
LOC_Os04g57300
Target Sequence 
GTGAATCTTCCAAGCGTTCATCGGAGCGTGTCCATTCTGGAGGGTTGAAGTTCCCCAGTGCTGATAAATCCAGCGGTTCT
AACGGCAGTGTGCATGCTCTGAACAGGAGTGCAGACGAACAGCTTCCATCAAGTGTATACTTCGTCAGGCTGTCGGACAT
GAATGCAGAAGAGTGGAATATATTCCTTGAGAAGTTCCAGGAGCTGCTGAAAGAAGCTCTGCAGGAGCGTGCGGCGGCTG
CAGGGCAGCGGATGAAGCAGCGGCTGGGCACTTCCTGCAAGTTTTGAGTAGGACCATAGAGCAGCAGAGAAGAAAAATAA
TGTAATGCTTGCTACTTGTGTTGCTTATTATGGAGTGAGTACAGGAAGGGATATATGCTCATGTGAGAAATGCCTACAGC
TTTGTGCAATGTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38230.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis