Browse Element(s) Details


Os.38316.1.S1_s_at

Description gb:AK068926.1
DB_XREF= gi:32978950
TID=Os.38316.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.38316 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0031D11.20 (P0031D11.20), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013170N02, full insert sequence.
FL= gb:AK068926.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6220010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g62150Os.24942.1.S1_at11/111+36308451..36311043Clathrin adaptor complex small chain family protein, expressed
LOC_Os01g62150OsAffx.23889.1.S1_s_at10/111+36308451..36311043Clathrin adaptor complex small chain family protein, expressed
LOC_Os01g62160Os.33927.1.S1_at11/111+36311107..36314405expressed protein
LOC_Os01g62170OsAffx.21761.1.S1_x_at11/111+36320830..36322782hypothetical protein
LOC_Os01g62170OsAffx.23890.4.S1_x_at10/111+36320830..36322782hypothetical protein
LOC_Os01g62170OsAffx.21761.1.S1_at9/111+36320830..36322782hypothetical protein
LOC_Os01g62170OsAffx.23890.2.S1_x_at6/111+36320830..36322782hypothetical protein
LOC_Os01g62170OsAffx.23890.2.S1_at5/111+36320830..36322782hypothetical protein
LOC_Os01g62180NANA1+36322908..36323828hypothetical protein
LOC_Os01g62190Os.10411.1.S1_at11/111+36328091..36328950Zinc finger, C2H2 type family protein, expressed
LOC_Os01g62200Os.38316.1.S1_at11/111+36329408..36331950expressed protein
LOC_Os01g62200Os.38316.1.S1_s_at10/111+36329408..36331950expressed protein
LOC_Os01g62200Os.27407.1.A1_at6/111+36329408..36331950expressed protein
LOC_Os01g62210Os.47966.1.S1_at10/111+36334251..36336745ribosomal protein L17 containing protein, expressed
LOC_Os01g62210OsAffx.21760.1.S1_at1/111+36334251..36336745ribosomal protein L17 containing protein, expressed
LOC_Os01g62220OsAffx.11696.1.S1_at11/111+36338499..36339869pentatricopeptide, putative
LOC_Os01g62230Os.19784.1.S1_at10/111+36340890..36341546Histone H2B, putative, expressed
LOC_Os01g62244Os.12603.1.S1_at11/111+36344054..36350317Ubiquitin-conjugating enzyme E2 7, putative, expressed
LOC_Os01g62244Os.51168.1.S1_at1/111+36344054..36350317Ubiquitin-conjugating enzyme E2 7, putative, expressed
LOC_Os01g62244Os.52300.1.S1_at1/111+36344054..36350317Ubiquitin-conjugating enzyme E2 7, putative, expressed
LOC_Os01g62260Os.28139.1.S1_at10/111+36356643..36357818Osmotin-like protein precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38316.1.S1_s_at--512--1931Chr01:36329631..36329655 (25 bp)
ACGGAGGCCGTGGACATGCACGACA
LOC_Os01g62200
Os.38316.1.S1_s_at--546--9031Chr01:36329615..36329639 (25 bp)
TGCACGACAGATGCATCCCGCGGAG
LOC_Os01g62200
Os.38316.1.S1_s_at--900--3511Chr01:36329557..36329581 (25 bp)
CATCTCCGGCGGGAACGGGCAGTAC
LOC_Os01g62200
Os.38316.1.S1_s_at--388--10251Chr01:36329504..36329528 (25 bp)
TTTGGGCTTGGGTTCAGGCTTGCGC
LOC_Os01g62200
Os.38316.1.S1_s_at--784--3631Chr01:36329486..36329510 (25 bp)
CTTGCGCCGGTGTGGTGATCTCATA
LOC_Os01g62200
Os.38316.1.S1_s_at--5--7751Chr01:36329478..36329502 (25 bp)
GGTGTGGTGATCTCATACTACCTAT
LOC_Os01g62200
Os.38316.1.S1_s_at--931--6411Chr01:36329470..36329494 (25 bp)
GATCTCATACTACCTATTGTACGGG
LOC_Os01g62200
Os.38316.1.S1_s_at--268--2031Chr01:36329462..36329486 (25 bp)
ACTACCTATTGTACGGGATGATAAT
LOC_Os01g62200
Os.38316.1.S1_s_at--955--6451Chr01:36329443..36329467 (25 bp)
GATAATTCCGAAATTGATACTCCTA
LOC_Os01g62200
Os.38316.1.S1_s_at--786--6471Chr01:36329428..36329452 (25 bp)
GATACTCCTATATGTTAGCCATTAA
LOC_Os01g62200
Os.38316.1.S1_s_at--785--131Chr01:36329408..36329432 (25 bp)
ATTAATTATGTTCTGTATATGCCTC
NONE
Target Sequence 
ACGGAGGCCGTGGACATGCACGACAGATGCATCCCGCGGAGGCCCAGGGGCAAGAAGGACGGCGGCGCCTACCTCATCTC
CGGCGGGAACGGGCAGTACGGGAGCAAAAGGCACGGGGGATGAGGAGTTTGGGCTTGGGTTCAGGCTTGCGCCGGTGTGG
TGATCTCATACTACCTATTGTACGGGATGATAATTCCGAAATTGATACTCCTATATGTTAGCCATTAATTATGTTCTGTA
TATGCCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38316.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis