Browse Element(s) Details


Os.38391.2.S1_at

Description gb:NM_191687.1
DB_XREF= gi:34910457
GEN=P0456F08.4
TID=Os.38391.2
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.38391 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative transcription factor (P0456F08.4), mRNA.
PROD=putative transcription factor
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5126011/11Myb-like DNA-binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g51220Os.1575.1.S1_at11/111+29769499..29773949Transport protein particle subunit trs31, putative, expressed
LOC_Os01g51230Os.1576.1.S1_at10/111+29774875..29777301IQ calmodulin-binding motif family protein, expressed
LOC_Os01g51240OsAffx.11557.1.S1_at11/111+29781501..29782308hypothetical protein
LOC_Os01g51250Os.1577.1.S1_at11/111+29785491..29789880Mitochondrial carrier protein, expressed
LOC_Os01g51250Os.1577.2.S1_x_at10/111+29785491..29789880Mitochondrial carrier protein, expressed
LOC_Os01g51260Os.38391.2.S1_at11/111+29796437..29798347Myb-like DNA-binding domain containing protein, expressed
LOC_Os01g51270NANA1+29802387..29802680hypothetical protein
LOC_Os01g51280Os.46757.1.S1_s_at11/111+29805955..29809697Survival protein SurE containing protein, expressed
LOC_Os01g51290Os.25899.1.S1_a_at11/111+29810069..29819366Protein kinase domain containing protein, expressed
LOC_Os01g51290Os.25899.2.S1_s_at11/111+29810069..29819366Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009411biological_processresponse to UV
GO:0009699biological_processphenylpropanoid biosynthesis
GO:0010119biological_processregulation of stomatal movement
GO:0010214biological_processseed coat development
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0016564molecular_functiontranscriptional repressor activity
GO:0016566molecular_functionspecific transcriptional repressor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38391.2.S1_at--1094--3631Chr01:29797311..29797525 (25 bp)
CTTCCTCTGCAGATTTGTACTACAA
LOC_Os01g51260
Os.38391.2.S1_at--661--7011Chr01:29797517..29797541 (25 bp)
GTACTACAACATTCTGGACGGAGCA
LOC_Os01g51260
Os.38391.2.S1_at--994--3391Chr01:29797555..29797579 (25 bp)
CAGCTGCGTCACTGAACGCGGTGGA
LOC_Os01g51260
Os.38391.2.S1_at--710--5271Chr01:29797580..29797604 (25 bp)
GAATGCAGCTCACGGTGTCACTCAA
LOC_Os01g51260
Os.38391.2.S1_at--620--10651Chr01:29797616..29797640 (25 bp)
TTCCGTGTACAACTCCGCGGCATGG
LOC_Os01g51260
Os.38391.2.S1_at--431--9611Chr01:29797741..29797765 (25 bp)
TCATCAGGCTGTGCCGAGCAGCGGA
LOC_Os01g51260
Os.38391.2.S1_at--284--2871Chr01:29797820..29797844 (25 bp)
AAGTGATCATCTCTTGGCTCCAGAG
LOC_Os01g51260
Os.38391.2.S1_at--1069--3791Chr01:29797866..29797890 (25 bp)
CTCCCGGCGTTTGTCGAACAGAAGG
LOC_Os01g51260
Os.38391.2.S1_at--646--4411Chr01:29797923..29797947 (25 bp)
GCCATGGGTCCGGTGATGGACTTCA
LOC_Os01g51260
Os.38391.2.S1_at--165--851Chr01:29797938..29797962 (25 bp)
ATGGACTTCATGGACGCCATCCTGG
LOC_Os01g51260
Os.38391.2.S1_at--469--1111Chr01:29797986..29798010 (25 bp)
AGTGCTTCATCCGTCGACAGCTTCT
LOC_Os01g51260
Target Sequence 
CTTCCTCTGCAGATTTGTACTACAACATTCTGGACGGAGCANGACAGANCATCGCAGCTGCGTCACTGAACGCGGTGGAG
AATGCAGCTCACGGTGTCACTCAATCGCCGCCGTCTTCCGTGTACAACTCCGCGGCATGGGCCAGCTTCAGCTCCCACCA
GCCAATCTTTCTCCCCGGCCACGGCGTCCACGGCTGCGGCGGCGGCGACCTTCAGTACGCCGCCGCCGTCGACGGGGAGT
TCATCAGGCTGTGCCGAGCAGCGGAGGCGTACCAGCTGGAGAACGGCGCCGCTGGCATCGTCGGGGGTCAGTGCAAGCCA
AGTGATCATCTCTTGGCTCCAGAGGGCGTCGTGGCCCGGAGTTGCCTCCCGGCGTTTGTCGAACAGAAGGGCGGCGGCGG
CGGCGCTTTCTTGGCCGATCCGGCCATGGGTCCGGTGATGGACTTCATGGACGCCATCCTGGGGTCGTCGACGACGTCGG
CGGCCAGTGCTTCATCCGTCGACAGCTTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38391.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis