Browse Element(s) Details


Os.38416.1.A1_at

Description gb:AK068746.1
DB_XREF= gi:32978769
TID=Os.38416.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.38416 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013161N21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013161N21, full insert sequence.
FL= gb:AK068746.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5027011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g50190OsAffx.29687.2.S1_at10/113+28576520..28578055hypothetical protein
LOC_Os03g50190OsAffx.14332.1.S1_x_at1/113+28576520..28578055hypothetical protein
LOC_Os03g50210Os.22831.1.S1_at11/113+28580817..28582548expressed protein
LOC_Os03g50220Os.52754.2.S1_at11/113+28581945..28585449Tat binding protein 1 containing protein, expressed
LOC_Os03g50220Os.52754.1.S1_x_at11/113+28581945..28585449Tat binding protein 1 containing protein, expressed
LOC_Os03g50230NANA3+28587672..28592810Protein kinase domain containing protein, expressed
LOC_Os03g50240OsAffx.30187.3.S1_at3/113+28594290..28594523hypothetical protein
LOC_Os03g50250OsAffx.13436.1.S1_at11/113+28596259..28598743Luminal binding protein 5 precursor, putative, expressed
LOC_Os03g50260NANA3+28599180..28599434hypothetical protein
LOC_Os03g50270Os.38416.1.A1_at11/113+28600283..28602236expressed protein
LOC_Os03g50280OsAffx.13437.1.S1_at10/113+28604454..28606583expressed protein
LOC_Os03g50290Os.2673.1.S1_at11/113+28612940..2861712414-3-3-like protein S94, putative, expressed
LOC_Os03g50300Os.25254.1.A1_at11/113+28620469..28628207expressed protein
LOC_Os03g50300Os.25254.2.S1_at11/113+28620469..28628207expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38416.1.A1_at--1066--10611Chr03:28601725..28601749 (25 bp)
TTCGTGCAGTACATGTGGGCGTTCG
LOC_Os03g50270
Os.38416.1.A1_at--427--7491Chr03:28600733..28600757 (25 bp)
GTGGGTTCGCTGTGGCAACGTATAA
LOC_Os03g50270
Os.38416.1.A1_at--793--5691Chr03:28600695..28600719 (25 bp)
GACTTCAGAGAAACTCCTTCCTACA
LOC_Os03g50270
Os.38416.1.A1_at--1152--9371Chr03:28600665..28600689 (25 bp)
TCGGTCCAAACACAGGAGTTCCCGG
LOC_Os03g50270
Os.38416.1.A1_at--115--6071Chr03:28600650..28600674 (25 bp)
GAGTTCCCGGAAGAGTCAGAATCAT
LOC_Os03g50270
Os.38416.1.A1_at--1133--8971Chr03:28600609..28600633 (25 bp)
TGAAGGTAACCCAACCGAGGTGGCA
LOC_Os03g50270
Os.38416.1.A1_at--137--8511Chr03:28600589..28600613 (25 bp)
TGGCACCGGCTCTTGAGTAGGACGT
LOC_Os03g50270
Os.38416.1.A1_at--171--291Chr03:28600518..28600542 (25 bp)
ATAGGGTTCTACAAGTCAGCAAGAC
LOC_Os03g50270
Os.38416.1.A1_at--971--1411Chr03:28600476..28600500 (25 bp)
AGAACAAGATTCACTCAGCTGGAAA
LOC_Os03g50270
Os.38416.1.A1_at--1008--3131Chr03:28600434..28600458 (25 bp)
AATTAGCTGGCGATTATTGTGTACT
LOC_Os03g50270
Os.38416.1.A1_at--407--10811Chr03:28600418..28600442 (25 bp)
TTGTGTACTAAATTTCCCCTGGATG
LOC_Os03g50270
Target Sequence 
TTCGTGCAGTACATGTGGGCGTTCGGCGTNTTNTTCGGCCTGGTTGCATGTGGGTTCGCTGTGGCAACGTATAACGAAGG
AGCGACAGACTTCAGAGAAACTCCTTCCTACAAGGAATCGGTCCAAACACAGGAGTTCCCGGAAGAGTCAGAATCATCAG
GCTCTGATGTGTTTGAAGGTAACCCAACCGAGGTGGCACCGGCTCTTGAGTAGGACGTCGGGAAGACATCGGAAATGGAA
AAATGAAGGTTGGCTATTGGAGCTATAGGGTTCTACAAGTCAGCAAGACATGTACGTGATGGTACAAGAACAAGATTCAC
TCAGCTGGAAAGGGGTAGTTTTTATGATAATTAGCTGGCGATTATTGTGTACTAAATTTCCCCTGGATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38416.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis