Browse Element(s) Details


Os.38424.1.S1_at

Description gb:AY336992.1
DB_XREF= gi:33243055
TID=Os.38424.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.38424 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) SKP1 mRNA, complete cds.
PROD=SKP1
FL= gb:AY336992.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2882011/11SKP1-like protein 1A, putative, expressed
LOC_Os08g288002/11SKP1-like protein 1A, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g28770NANA8+17465103..17470360retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g28780OsAffx.5970.1.S1_at11/118+17471719..17472278Skp1 family, dimerisation domain containing protein
LOC_Os08g28790Os.55488.1.S1_at11/118+17480729..17481529Dirigent-like protein, expressed
LOC_Os08g28800Os.38424.1.S1_at2/118+17485050..17485559SKP1-like protein 1A, putative
LOC_Os08g28810OsAffx.17215.1.S1_at10/118+17488533..17489908hypothetical protein
LOC_Os08g28820Os.38424.1.S1_at11/118+17492372..17493100SKP1-like protein 1A, putative, expressed
LOC_Os08g28830Os.53997.1.S1_at11/118+17495825..17498341pentatricopeptide, putative, expressed
LOC_Os08g28840Os.52872.1.S1_x_at11/118+17501947..17505641hydrolase, NUDIX family protein, expressed
LOC_Os08g28850NANA8+17506575..17507488hypothetical protein
LOC_Os08g28860Os.15459.1.S1_at7/118+17510737..17513901coenzyme A diphosphatase NUDT11, putative, expressed
LOC_Os08g28870Os.53377.1.S1_at11/118+17517714..17521044Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0007067biological_processmitosis
GO:0007140biological_processmale meiosis
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0000151cellular_componentubiquitin ligase complex
GO:0005634cellular_componentnucleus
GO:0005730cellular_componentnucleolus
GO:0005737cellular_componentcytoplasm
GO:0005819cellular_componentspindle
GO:0009524cellular_componentphragmoplast
GO:0019005cellular_componentSCF ubiquitin ligase complex
GO:0004842molecular_functionubiquitin-protein ligase activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38424.1.S1_at--306--2771Chr08:17492528..17492552 (25 bp)
AAGACGTTATCCCACATGATCGAGG
LOC_Os08g28820
Os.38424.1.S1_at--932--512Chr08:17492546..17492570 (25 bp)
ATCGAGGATGACTGCACCGACAATG
LOC_Os08g28820
Os.38424.1.S1_at--160--2671Chr08:17492664..17492688 (25 bp)
AAGCCGTCGCCGCTGATAAAGCGAA
LOC_Os08g28820
Os.38424.1.S1_at--761--10851Chr08:17492762..17492786 (25 bp)
TTGGCTGCAAACTTCTTGAACGCGC
LOC_Os08g28820
Os.38424.1.S1_at--1060--4572Chr08:17492783..17492807 (25 bp)
GCGCAGGACCTGCTAGATCTGACCT
LOC_Os08g28820
Os.38424.1.S1_at--10--1711Chr08:17492873..17492897 (25 bp)
ACCAATGACTTCACGCCAGAGGAGG
LOC_Os08g28820
Os.38424.1.S1_at--478--5452Chr08:17492917..17492941 (25 bp)
GAACGCTTGGGCTTTTGACAACTAG
LOC_Os08g28820
Os.38424.1.S1_at--1111--8271Chr08:17492966..17492990 (25 bp)
GGCATTTGTCATTAACTATCGTCGT
LOC_Os08g28820
Os.38424.1.S1_at--542--10151Chr08:17492982..17493006 (25 bp)
TATCGTCGTGTGTTAGTTACTAGTA
LOC_Os08g28820
Os.38424.1.S1_at--766--9751Chr08:17493056..17493080 (25 bp)
TAAGTAATTTACTGCATTGCCTCCT
LOC_Os08g28820
Os.38424.1.S1_at--785--4931Chr08:17493069..17493093 (25 bp)
GCATTGCCTCCTAATTTATTTACTT
LOC_Os08g28820
Target Sequence 
AAGACGTTATCCCACATGATCGAGGATGACTGCACCGACAATGGGGTTCCCCTCCCCAACGTCACCGCCGTCGTTCTCGC
CAAGGTGGTCGAGTACTTCAAGAAACACGCCGCCGTCACCCCCAAGCCGGCCACAGAAGCCGTCGCCGCTGATAAAGCGA
AGAGGGAGGAGGAGCTCAAGAGCTTCGACGCCGAGTTCGTCGACGTCGACAGGACGATGGTGTTCGAGTTGATTTTGGCT
GCAAACTTCTTGAACGCGCAGGACCTGCTAGATCTGACCTGCCAGCACGCGGCGGACTTGATCAAAGACATGTCGGTGGA
GGAGGTCAGGGAGGTGTTCAACATCACCAATGACTTCACGCCAGAGGAGGAGGCGGAGGTCCGTAAGGAGAACGCTTGGG
CTTTTGACAACTAGTGACAACTAGGGTATCAAAGATTGATATAATTTAGGCATTTGTCATTAACTATCGTCGTGTGTTAG
TTACTAGTACTTATTTAGCACTGATAGGATTTAGCTGTTTAGGTGGTTGATATATACTTAAGTAATTTACTGCATTGCCT
CCTAATTTATTTACTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38424.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis