Browse Element(s) Details


Os.38785.1.A1_at

Description gb:CB666937
DB_XREF= gi:29670662
DB_XREF=OSJNEd14A19.r
CLONE=OSJNEd14A19
TID=Os.38785.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.38785 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g442301/11proline transporter, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g44170Os.56896.1.S1_at10/113+24779575..24780776Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os03g44180OsAffx.24252.1.S1_x_at2/113+24783093..24783852hypothetical protein
LOC_Os03g44190Os.52810.1.S1_at11/113+24788114..24789396expressed protein
LOC_Os03g44200Os.17074.1.S1_at11/113+24789804..24795501Beclin-1, putative, expressed
LOC_Os03g44210Os.53656.1.S1_at11/113+24797431..24799821PPR986-12, putative, expressed
LOC_Os03g44220OsAffx.25533.1.S1_at9/113+24800559..24802274hypothetical protein
LOC_Os03g44230Os.3739.1.S1_at11/113+24804380..24808576proline transporter, putative, expressed
LOC_Os03g44230Os.38785.1.A1_at1/113+24804380..24808576proline transporter, putative, expressed
LOC_Os03g44240OsAffx.10048.1.S1_x_at1/113+24812621..24816981retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os03g44250OsAffx.25534.1.S1_at11/113+24819699..24820547hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006865biological_processamino acid transport
GO:0015824biological_processL-proline transport
GO:0005886cellular_componentplasma membrane
GO:0016020cellular_componentmembrane
GO:0015193molecular_functionL-proline transporter activity
GO:0015359molecular_functionamino acid permease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38785.1.A1_at--804--2052Chr07:21804675..21804699 (25 bp)
ACTTCTTGTGGATTTCTTTTATTCA
NONE
Os.38785.1.A1_at--658--2412Chr07:21804587..21804611 (25 bp)
AAAAATCACTTACATGGGCTCATCA
NONE
Os.38785.1.A1_at--1054--9552Chr07:21804552..21804576 (25 bp)
TCTTTTCACGATCAACATTAGCTTT
NONE
Os.38785.1.A1_at--914--10412Chr07:21804529..21804553 (25 bp)
TTATCATCTTAGCTAGCCAAGCCCT
NONE
Os.38785.1.A1_at--470--9953Chr07:21804516..21804540 (25 bp)
TAGCCAAGCCCTGAAGGTACAGAGT
NONE
Os.38785.1.A1_at--903--732Chr07:21804459..21804483 (25 bp)
ATGTTCTTCACTCTCCATCTTTATC
NONE
Os.38785.1.A1_at--673--432Chr07:21804443..21804467 (25 bp)
ATCTTTATCCCCTGCAAATCAGCAA
NONE
Os.38785.1.A1_at--578--852Chr07:21804419..21804443 (25 bp)
ATGGCTGGCCCTTCTATTCATTTTT
NONE
Os.38785.1.A1_at--1040--6652Chr07:21804355..21804379 (25 bp)
GTTGAATTTCTTTACTGGGAGAGCT
NONE
Os.38785.1.A1_at--654--8533Chr07:21804298..21804322 (25 bp)
TGGACTCACTTCTGAACTCTCTGCA
NONE
Os.38785.1.A1_at--668--5472Chr07:21804285..21804309 (25 bp)
GAACTCTCTGCAGGCAATGTACGTA
NONE
Target Sequence 
ACTTCTTGTGGATTTCTTTTATTCATAAAATATGCTAATTTTGTTTTTGCAGTTTGAGTAACCTTTATTTTGGTGACTAC
AGGTAAAAAAAAATCACTTACATGGGCTCATCAANATGTTAAATCTTTTCACGATCAACATTAGCTTTATCATCTTAGCT
AGCCAAGCCCTGAAGGTACAGAGTAATCACTATCCNCTAACTCTGATGAAAATGCCATGTTCTTCACTCTCCATCTTTAT
CCCCTGCAAATCAGCAATGGCTGGCCCTTCTATTCATTTTTGTATCTAAGTTTAGAAATTACTCCAGGGTAAATCCATAT
GTTGAATTTCTTTACTGGGAGAGCTAATTAGTTGATGCGGGAAATANTTTTCCCTCCTGGACTCACTTCTGAACTCTCTG
CAGGCAATGTACGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38785.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis