Browse Element(s) Details

Os.39031.1.S1_at

Description

gb:CF311444
DB_XREF= gi:33683205
DB_XREF=ABF--06-K15.g1
CLONE=ABF--06-K15
TID=Os.39031.1
CNT=3
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.39031 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g09990	5/11	hypothetical protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g09950	OsAffx.15341.1.S1_at	11/11	6	+	5070901..5071113	hypothetical protein
LOC_Os06g09960	OsAffx.27541.1.S1_at	10/11	6	+	5081730..5083092	expressed protein
LOC_Os06g09960	OsAffx.24432.1.S1_at	3/11	6	+	5081730..5083092	expressed protein
LOC_Os06g09970	OsAffx.4783.1.S1_at	11/11	6	+	5084604..5085091	hypothetical protein
LOC_Os06g09980	Os.54864.2.S1_at	11/11	6	+	5089958..5091121	expressed protein
LOC_Os06g09990	OsAffx.27542.1.S1_s_at	11/11	6	+	5096036..5096381	hypothetical protein
LOC_Os06g09990	Os.39031.1.S1_at	5/11	6	+	5096036..5096381	hypothetical protein
LOC_Os06g10000	Os.55490.1.S1_at	10/11	6	+	5101390..5102442	expressed protein
LOC_Os06g10000	Os.57449.1.S1_x_at	1/11	6	+	5101390..5102442	expressed protein
LOC_Os06g10010	NA	NA	6	+	5103666..5104193	hypothetical protein
LOC_Os06g10020	Os.56042.1.S1_at	11/11	6	+	5105166..5105930	expressed protein
LOC_Os06g10030	NA	NA	6	+	5108369..5108719	hypothetical protein
LOC_Os06g10040	NA	NA	6	+	5117540..5117878	hypothetical protein
LOC_Os06g10050	NA	NA	6	+	5120690..5121061	hypothetical protein

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Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.39031.1.S1_at--565--1077	1	Chr06:5096493..5096517 (25 bp)	TTGATCGAGTTCCAGCTTCAGCGAA	NONE
Os.39031.1.S1_at--458--365	1	Chr06:5096478..5096502 (25 bp)	CTTCAGCGAAGCGTATGCAGTGCAA	NONE
Os.39031.1.S1_at--1151--509	1	Chr06:5096457..5096481 (25 bp)	GCAAAAACAGATCAGCGGACTGCTT	NONE
Os.39031.1.S1_at--29--41	1	Chr06:5096405..5096429 (25 bp)	ATCAGCAGTGACGAATGGGTGGCAC	NONE
Os.39031.1.S1_at--635--951	1	Chr06:5096257..5096281 (25 bp)	TCTCGTATGGAGGTAATGGACTAAT	LOC_Os06g09990
Os.39031.1.S1_at--776--851	1	Chr06:5096241..5096265 (25 bp)	TGGACTAATGGCCAGGACGCCTGAT	LOC_Os06g09990
Os.39031.1.S1_at--462--581	1	Chr06:5096226..5096250 (25 bp)	GACGCCTGATTCTGTCTACTTCCAA	LOC_Os06g09990
Os.39031.1.S1_at--614--387	1	Chr06:5096215..5096239 (25 bp)	CTGTCTACTTCCAATCTTCCAGGAA	LOC_Os06g09990
Os.39031.1.S1_at--904--201	1	Chr06:5096117..5096141 (25 bp)	ACTAGCAGGTAAGCGTTAATATGTT	LOC_Os06g09990
Os.39031.1.S1_at--1063--989	1	Chr06:5096008..5096032 (25 bp)	TACTCTCCCTTCTCCTCGTGTAAAA	NONE
Os.39031.1.S1_at--760--737	1	Chr06:5095974..5095998 (25 bp)	GTGACCACTTCGGAATATCGCCGTT	NONE

Target Sequence

TTGATCGAGTTCCAGCTTCAGCGAAGCGTATGCAGTGCAAAAACAGATCAGCGGACTGCTTNNCAGCAAGGAAATAGAGA
AGGAGTGGATCAGCAGTGACGAATGGGTGGCACTGAATTGAGGGATTCCATGGAAGATGGAGCAGTCTCCAGCAATGAAA
TTCCCTTTCATCTTTACAGATGAAAGTAACAGAGCATTNGGTTGGACAGAGAGCCTCTCTCAACTGGTCATGGAGACTCT
CGTATGGAGGTAATGGACTAATGGCCAGGACGCCTGATTCTGTCTACTTCCAATCTTCCAGGAAGGATTCTGTCTATTTT
TCCGGGGCAGTTCAAGCAGGAAGAGAAACGGGCTAAATTCAAGAGGAACTTACAAAAACTAGCAGGTAAGCGTTAATATG
TTACTTTAGTCCCCGTTTCTTTTTTTTCATTTTCCAGCTATTTTTATTGTTCGGGACCTGTTTTTACCTAGCTTACCTTA
GCCTTACTCTCCCTTCTCCTCGTGTAAAACCCTCCCTCGTGACCACTTCGGAATATCGCCGTT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis