Browse Element(s) Details


Os.39043.1.S1_s_at

Description gb:BI811744
DB_XREF= gi:16577649
DB_XREF=A005A08
CLONE=A005A08
TID=Os.39043.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.39043 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_199351.1 (A.thaliana) urea active transporter-like protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g429609/11SSS sodium solute transporter superfamily protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g42900Os.46613.1.S2_at11/1110+22799307..22802248POT family protein, expressed
LOC_Os10g42900Os.46613.1.S1_s_at11/1110+22799307..22802248POT family protein, expressed
LOC_Os10g42900Os.46613.1.S1_at11/1110+22799307..22802248POT family protein, expressed
LOC_Os10g42910OsAffx.13097.1.S1_s_at4/1110+22802600..22812009transposon protein, putative, Mutator sub-class, expressed
LOC_Os10g42920OsAffx.6947.1.S1_at11/1110+22812227..22812651hypothetical protein
LOC_Os10g42930OsAffx.20120.1.S1_at10/1110+22813495..22814824hypothetical protein
LOC_Os10g42930Os.46738.1.S1_s_at1/1110+22813495..22814824hypothetical protein
LOC_Os10g42940Os.4758.1.S1_at10/1110+22816803..22818952ADP-ribosylation factor, putative, expressed
LOC_Os10g42950Os.2989.1.S1_at11/1110+22819042..22823531Protein kinase domain containing protein, expressed
LOC_Os10g42960Os.39043.1.S1_s_at9/1110+22827191..22829895SSS sodium solute transporter superfamily protein, expressed
LOC_Os10g42970OsAffx.11826.1.S1_at11/1110+22830776..22832724expressed protein
LOC_Os10g42970Os.15132.1.S1_x_at8/1110+22830776..22832724expressed protein
LOC_Os10g42970Os.23711.1.S1_x_at2/1110+22830776..22832724expressed protein
LOC_Os10g42970Os.23711.1.S1_at1/1110+22830776..22832724expressed protein
LOC_Os10g42980Os.2987.3.S1_x_at11/1110+22835526..22837607retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os10g42999NANA10+22839762..22846039retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g43020Os.46995.1.S1_x_at1/1110+22850109..22852221retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0015204molecular_functionurea transporter activity
GO:0015370molecular_functionsolute:sodium symporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.39043.1.S1_s_at--963--6371Chr10:22829371..22829395 (25 bp)
GATCGCGTGGGGGACTGTGGGCTCG
LOC_Os10g42960
Os.39043.1.S1_s_at--962--1851Chr10:22829469..22829493 (25 bp)
ACGACGCTGTGTACGACCGCCTCGA
LOC_Os10g42960
Os.39043.1.S1_s_at--195--4331Chr10:22829529..22829553 (25 bp)
CCATGCCCGAGGCTGAGAAGCGCTA
LOC_Os10g42960
Os.39043.1.S1_s_at--64--3531Chr10:22829530..22829554 (25 bp)
CATGCCCGAGGCTGAGAAGCGCTAC
LOC_Os10g42960
Os.39043.1.S1_s_at--328--591Chr10:22829531..22829555 (25 bp)
ATGCCCGAGGCTGAGAAGCGCTACC
LOC_Os10g42960
Os.39043.1.S1_s_at--631--9171Chr10:22829532..22829556 (25 bp)
TGCCCGAGGCTGAGAAGCGCTACCG
LOC_Os10g42960
Os.39043.1.S1_s_at--747--4531Chr10:22829533..22829557 (25 bp)
GCCCGAGGCTGAGAAGCGCTACCGC
LOC_Os10g42960
Os.39043.1.S1_s_at--530--4231Chr10:22829535..22829559 (25 bp)
CCGAGGCTGAGAAGCGCTACCGCCA
LOC_Os10g42960
Os.39043.1.S1_s_at--99--4071Chr10:22829536..22829560 (25 bp)
CGAGGCTGAGAAGCGCTACCGCCAG
LOC_Os10g42960
Target Sequence 
GATCGCGTGGGGGACTGTGGGCTCGNTCGTCATCATCCTTCTNCCGNTGNCCGAGAGCTGGACCNCCATCACCNAGGTCT
GCGCCGGCATGTTCACCNACGACGCTGTGTACGACCGCCTCGACGACGTCAACCTCCGCCTCCGCGCCATCATGGGCGCC
ATGCCCGAGGCTGAGAAGCGCTACCGCCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.39043.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis