Browse Element(s) Details


Os.39238.1.A1_at

Description gb:CR285833
DB_XREF= gi:44672399
DB_XREF=CR285833
CLONE=y617b10p3
TID=Os.39238.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.39238 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2334011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g23300Os.9660.1.S1_at11/119+13830867..13832602Integral membrane protein, expressed
LOC_Os09g23300OsAffx.6372.1.S1_s_at11/119+13830867..13832602Integral membrane protein, expressed
LOC_Os09g23310Os.46715.1.S1_x_at1/119+13837253..13841419retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g23310Os.46715.1.S1_at1/119+13837253..13841419retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g23310OsAffx.27823.1.S1_at1/119+13837253..13841419retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g23320Os.52609.1.S1_at1/119+13845784..13846985retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g23330NANA9+13847140..13847744retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g23340Os.39238.1.A1_at11/119+13854139..13855577expressed protein
LOC_Os09g23340OsAffx.29984.1.S1_s_at10/119+13854139..13855577expressed protein
LOC_Os09g23340OsAffx.29984.1.S1_at2/119+13854139..13855577expressed protein
LOC_Os09g23350Os.15914.1.S1_at11/119+13874998..13878642glycosyl transferase family 20 protein, putative, expressed
LOC_Os09g23360Os.51840.1.S1_at11/119+13879664..13882886expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.39238.1.A1_at--181--7811Chr09:13854869..13854982 (25 bp)
GGTCTGCCCAAAAGTTTCTTCTTGT
LOC_Os09g23340
Os.39238.1.A1_at--729--6831Chr09:13854971..13854995 (25 bp)
GTTTCTTCTTGTTAAGCAATGGGCA
LOC_Os09g23340
Os.39238.1.A1_at--73--5191Chr09:13854986..13855010 (25 bp)
GCAATGGGCAGTGTTAATTTCTTAC
LOC_Os09g23340
Os.39238.1.A1_at--100--7431Chr09:13854996..13855020 (25 bp)
GTGTTAATTTCTTACTCCTCTGTTC
LOC_Os09g23340
Os.39238.1.A1_at--469--191Chr09:13855002..13855026 (25 bp)
ATTTCTTACTCCTCTGTTCTTGGTT
LOC_Os09g23340
Os.39238.1.A1_at--785--6731Chr09:13855017..13855041 (25 bp)
GTTCTTGGTTTTGCTCTTTATAATC
LOC_Os09g23340
Os.39238.1.A1_at--1152--4811Chr09:13855029..13855053 (25 bp)
GCTCTTTATAATCTGCATTTGTTTA
LOC_Os09g23340
Os.39238.1.A1_at--9--2991Chr09:13855065..13855089 (25 bp)
AATGTCAGCTGCAAGCTCTATGACC
LOC_Os09g23340
Os.39238.1.A1_at--123--3251Chr09:13855076..13855100 (25 bp)
CAAGCTCTATGACCCTTTGCTATTA
LOC_Os09g23340
Os.39238.1.A1_at--105--6611Chr09:13855107..13855131 (25 bp)
GATTGTGTTATGAGCTTGTGGTCAA
LOC_Os09g23340
Os.39238.1.A1_at--245--7831Chr09:13855126..13855150 (25 bp)
GGTCAATGTCTTATCAGGCTTTGCT
LOC_Os09g23340
Target Sequence 
GGTCTGCCCAAAAGTTTCTTCTTGTTAAGCAATGGGCAGTGTTAATTTCTTACTCCTCTGTTCTTGGTTTTGCTCTTTAT
AATCTGCATTTGTTTAGTTGAGAAGAAAATGTCAGCTGCAAGCTCTATGACCCTTTGCTATTAAAGTATGATTGTGTTAT
GAGCTTGTGGTCAATGTCTTATCAGGCTTTGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.39238.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis