Browse Element(s) Details


OsAffx.29984.1.S1_at

Description tigr:9637.m01993
TID=OsAffx.29984.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g233402/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g23300Os.9660.1.S1_at11/119+13830867..13832602Integral membrane protein, expressed
LOC_Os09g23300OsAffx.6372.1.S1_s_at11/119+13830867..13832602Integral membrane protein, expressed
LOC_Os09g23310Os.46715.1.S1_x_at1/119+13837253..13841419retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g23310Os.46715.1.S1_at1/119+13837253..13841419retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g23310OsAffx.27823.1.S1_at1/119+13837253..13841419retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g23320Os.52609.1.S1_at1/119+13845784..13846985retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g23330NANA9+13847140..13847744retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g23340Os.39238.1.A1_at11/119+13854139..13855577expressed protein
LOC_Os09g23340OsAffx.29984.1.S1_s_at10/119+13854139..13855577expressed protein
LOC_Os09g23340OsAffx.29984.1.S1_at2/119+13854139..13855577expressed protein
LOC_Os09g23350Os.15914.1.S1_at11/119+13874998..13878642glycosyl transferase family 20 protein, putative, expressed
LOC_Os09g23360Os.51840.1.S1_at11/119+13879664..13882886expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29984.1.S1_at--866--10311Chr09:13853990..13854014 (25 bp)
TTTAGGGTTAGGTCTCGAGACTCCA
NONE
OsAffx.29984.1.S1_at--61--7691Chr09:13853994..13854018 (25 bp)
GGGTTAGGTCTCGAGACTCCAAGAA
NONE
OsAffx.29984.1.S1_at--283--7171Chr09:13854001..13854025 (25 bp)
GTCTCGAGACTCCAAGAACAGCTTC
NONE
OsAffx.29984.1.S1_at--202--5711Chr09:13854008..13854032 (25 bp)
GACTCCAAGAACAGCTTCGATTCCT
NONE
OsAffx.29984.1.S1_at--253--2751Chr09:13854014..13854038 (25 bp)
AAGAACAGCTTCGATTCCTCAGTAG
NONE
OsAffx.29984.1.S1_at--782--5491Chr09:13854016..13854040 (25 bp)
GAACAGCTTCGATTCCTCAGTAGGA
NONE
OsAffx.29984.1.S1_at--956--2131Chr09:13854018..13854042 (25 bp)
ACAGCTTCGATTCCTCAGTAGGAGG
NONE
OsAffx.29984.1.S1_at--120--7211Chr09:13854069..13854093 (25 bp)
GTCGTCGTTGCTCCGATCAGTCGCC
NONE
OsAffx.29984.1.S1_at--858--6671Chr09:13854075..13854099 (25 bp)
GTTGCTCCGATCAGTCGCCCGCGAG
NONE
OsAffx.29984.1.S1_at--1142--6991Chr09:13855162..13855186 (25 bp)
GTACTCCGTATACTGAAAATCTCTA
LOC_Os09g23340
OsAffx.29984.1.S1_at--520--311Chr09:13855171..13855195 (25 bp)
ATACTGAAAATCTCTATATCTATAG
LOC_Os09g23340
Target Sequence 
TTTAGGGTTAGGTCTCGAGACTCCAAGAACAGCTTCGATTCCTCAGTAGGAGGAGGAGGAGGATGGCTTCGTCGTCTTCG
TCGTCGTTGCTCCGATCAGTCGCCCGCGAGCTCCGGCGGTCGATCCCTCCGCCGCGCCCGCGCCCGGCCATGTCGGTGAT
GGACCGACTCGCCCCGCGTCTCCTCAGCACCGAGTCCTCTAACCACAAGATGAACCCCTCCTCCTCCTCCTCGCCGCTTC
TGGACAACTTCTTCCGCTCCGATCGCGCTAAGAGGATGGATACCAGTAAGGTTCAATTCTCAAAGGACGACCTTAAGGAA
TTTGATAGGTATTTGGATGAGAGGACGAAGCAAGCTGAGAGGAACTTGTTGCTGTCTCTGGACAAGTTCTGTGATGCCTG
TGAAAGACGGGCTTCTCTGCTTCGAGACATCAAAGCGATGTTAGAGGCTAGAAATAAACGGTCTGCCCAAAAGCTTTGCT
TTGGATTTAATGTACTCCGTATACTGAAAATCTCTATATCTATAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29984.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis