Browse Element(s) Details


OsAffx.6372.1.S1_s_at

Description tigr:9637.m01988
TID=OsAffx.6372.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=membrane protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2330011/11Integral membrane protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g23270OsAffx.29982.1.S1_at10/119+13806733..13808173hypothetical protein
LOC_Os09g23280Os.16777.1.S1_at9/119+13812680..13815757pyrrolidone-carboxylate peptidase family protein, expressed
LOC_Os09g23280Os.8636.1.S1_at1/119+13812680..13815757pyrrolidone-carboxylate peptidase family protein, expressed
LOC_Os09g23290OsAffx.17854.1.S1_at11/119+13823698..13824133hypothetical protein
LOC_Os09g23290Os.22698.1.S1_at1/119+13823698..13824133hypothetical protein
LOC_Os09g23300Os.9660.1.S1_at11/119+13830867..13832602Integral membrane protein, expressed
LOC_Os09g23300OsAffx.6372.1.S1_s_at11/119+13830867..13832602Integral membrane protein, expressed
LOC_Os09g23310Os.46715.1.S1_x_at1/119+13837253..13841419retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g23310Os.46715.1.S1_at1/119+13837253..13841419retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g23310OsAffx.27823.1.S1_at1/119+13837253..13841419retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g23320Os.52609.1.S1_at1/119+13845784..13846985retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g23330NANA9+13847140..13847744retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g23340Os.39238.1.A1_at11/119+13854139..13855577expressed protein
LOC_Os09g23340OsAffx.29984.1.S1_s_at10/119+13854139..13855577expressed protein
LOC_Os09g23340OsAffx.29984.1.S1_at2/119+13854139..13855577expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6372.1.S1_s_at--159--1971Chr09:13831766..13831790 (25 bp)
ACTGTCGCAGTATGGGCTGGGCCCA
LOC_Os09g23300
OsAffx.6372.1.S1_s_at--73--10851Chr09:13832037..13832061 (25 bp)
TTGGGACTGGAGAAGCCGGAACCAA
LOC_Os09g23300
OsAffx.6372.1.S1_s_at--682--5451Chr09:13832083..13832107 (25 bp)
GAACGATCGCGCTGGCTTATGTGGT
LOC_Os09g23300
OsAffx.6372.1.S1_s_at--354--3711Chr09:13832127..13832151 (25 bp)
CTACCCTACATGTTTGTGCCGACGG
LOC_Os09g23300
OsAffx.6372.1.S1_s_at--1095--3711Chr09:13832132..13832156 (25 bp)
CTACATGTTTGTGCCGACGGCCGAC
LOC_Os09g23300
OsAffx.6372.1.S1_s_at--976--2051Chr09:13832195..13832219 (25 bp)
ACTTCTCTTCTTCGGCTATGTCAAG
LOC_Os09g23300
OsAffx.6372.1.S1_s_at--899--9511Chr09:13832198..13832222 (25 bp)
TCTCTTCTTCGGCTATGTCAAGGGC
LOC_Os09g23300
OsAffx.6372.1.S1_s_at--361--8731Chr09:13832213..13832237 (25 bp)
TGTCAAGGGCCGGTTTACTGGCAAC
LOC_Os09g23300
OsAffx.6372.1.S1_s_at--159--7871Chr09:13832224..13832248 (25 bp)
GGTTTACTGGCAACCGGCCCTTCAT
LOC_Os09g23300
OsAffx.6372.1.S1_s_at--1152--1651Chr09:13832250..13832274 (25 bp)
AGCGCCTTCCAGACCGCTGTTATCG
LOC_Os09g23300
OsAffx.6372.1.S1_s_at--457--1391Chr09:13832260..13832284 (25 bp)
AGACCGCTGTTATCGGCGCTCTCGC
LOC_Os09g23300
Target Sequence 
ACTGTCGCAGTATGGGCTGGGCCCAGAGGAGTATGGGCCCGTTGTTAACTCCCTCCGCAGCAACCCCAAGGCCTGGCTCG
AATTCATGATGAAGTTTGAGTTGGGACTGGAGAAGCCGGAACCAAGGAGGGCGCTGATGAGCGCGGGAACGATCGCGCTG
GCTTATGTGGTGGGTGGGCTGGTGCCACTCCTACCCTACATGTTTGTGCCGACGGCCGACCGAGCCATGGCCACCTCGGT
CGTCGTCACGCTCGCCGCACTTCTCTTCTTCGGCTATGTCAAGGGCCGGTTTACTGGCAACCGGCCCTTCATCAGCGCCT
TCCAGACCGCTGTTATCGGCGCTCTCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6372.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis