Browse Element(s) Details


Os.22698.1.S1_at

Description gb:BE040140
DB_XREF= gi:8335156
DB_XREF=OD102H06
TID=Os.22698.1
CNT=8
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.22698 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g232901/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g23250NANA9+13797350..13800103hypothetical protein
LOC_Os09g23260OsAffx.24317.3.S1_at6/119+13803502..13805670transposon protein, putative, unclassified
LOC_Os09g23260OsAffx.24317.5.S1_x_at4/119+13803502..13805670transposon protein, putative, unclassified
LOC_Os09g23260Os.9332.2.S1_x_at2/119+13803502..13805670transposon protein, putative, unclassified
LOC_Os09g23260Os.9332.2.S1_at1/119+13803502..13805670transposon protein, putative, unclassified
LOC_Os09g23270OsAffx.29982.1.S1_at10/119+13806733..13808173hypothetical protein
LOC_Os09g23280Os.16777.1.S1_at9/119+13812680..13815757pyrrolidone-carboxylate peptidase family protein, expressed
LOC_Os09g23280Os.8636.1.S1_at1/119+13812680..13815757pyrrolidone-carboxylate peptidase family protein, expressed
LOC_Os09g23290OsAffx.17854.1.S1_at11/119+13823698..13824133hypothetical protein
LOC_Os09g23290Os.22698.1.S1_at1/119+13823698..13824133hypothetical protein
LOC_Os09g23300Os.9660.1.S1_at11/119+13830867..13832602Integral membrane protein, expressed
LOC_Os09g23300OsAffx.6372.1.S1_s_at11/119+13830867..13832602Integral membrane protein, expressed
LOC_Os09g23310Os.46715.1.S1_x_at1/119+13837253..13841419retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g23310Os.46715.1.S1_at1/119+13837253..13841419retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g23310OsAffx.27823.1.S1_at1/119+13837253..13841419retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g23320Os.52609.1.S1_at1/119+13845784..13846985retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g23330NANA9+13847140..13847744retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22698.1.S1_at--31--6411Chr06:20695952..20695976 (25 bp)
GATCTGACCTCCTTGAGGTCGGAGC
NONE
Os.22698.1.S1_at--771--1671Chr03:7684537..7684559 (22 bp)
AGCCGACCTCACTATCATGGATCAC
NONE
Os.22698.1.S1_at--469--5791NONE
GACGACGGCAGCAGATCCACATCCA
NONE
Os.22698.1.S1_at--56--592Chr09:13823927..13824029 (25 bp)
ATCCACTGGGATGGTGAGTCTGATA
LOC_Os09g23290
Os.22698.1.S1_at--1131--8673Chr02:7157330..7157353 (24 bp)
TGTGATTAGCTTGTTCTTGTCTTCT
NONE
Os.22698.1.S1_at--58--3631Chr06:20695670..20695694 (25 bp)
CTTGTCTTCTTGATATGTGATGTGC
NONE
Os.22698.1.S1_at--938--7391Chr06:20695654..20695678 (25 bp)
GTGATGTGCTTTTTTGTTGTTGATG
NONE
Os.22698.1.S1_at--218--2051NONE
ACTTGAGCCCGGGTTACAGTTGATT
NONE
Os.22698.1.S1_at--592--1911NONE
ACGTGGTGGTTCTATACTGTATAAC
NONE
Os.22698.1.S1_at--875--6851NONE
GTATAACTGGCACCTTATTTGGGAC
NONE
Os.22698.1.S1_at--202--8811NONE
TGCCCTTAAATTGGTCCCCATTTAG
NONE
Target Sequence 
GATCTGACCTCCTTGAGGTCGGAGCACGCTGGATCCAGCCGCAGCCGACCTCACTATCATGGATCACCTCACACGCACTC
GGGGGCTGGTGTGGTCTGGCTGGAAGGAGATGATGGTAGCGACGGCTCGAAGGAGATAAGCAGCAAGGGAATCGATGACG
ACGGCAGCAGATCCACATCCACTGGGATGGTGAGTCTGATATGTTGGGCATGTAATGGTTGGGTATGGCGGAAGATTTTG
ATCTATGTGAATTGTTCTGATNTGGGATGTGATTAGCTTGTTCTTGTCTTCTTGATATGTGATGTGCTTTTTTGTTGTTG
ATGTGTGCATATGCTATNATATTCTTATTGNTTTGTAATGTGGATGAAGAAAATTGCAGGCTGGGGAATCTTGGGGGCAC
TTGAGCCCGGGTTACAGTTGATTCGAGCATCATACAATCATTTAATTTATATTTTTAAAGAATATACGTGGTGGTTCTAT
ACTGTATAACTGGCACCTTATTTGGGACCGGGAAAGGTGCCCTTAAATTGGTCCCCATTTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22698.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis