Browse Element(s) Details


Os.16777.1.S1_at

Description gb:AK060069.1
DB_XREF= gi:32970087
TID=Os.16777.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.16777 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-038-A05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-305-H12, full insert sequence.
FL= gb:AK105043.1 gb:AK060069.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g232809/11pyrrolidone-carboxylate peptidase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g23230OsAffx.24317.6.S1_x_at10/119+13788427..13791479transposon protein, putative, unclassified
LOC_Os09g23230OsAffx.23650.1.S1_at1/119+13788427..13791479transposon protein, putative, unclassified
LOC_Os09g23240OsAffx.17852.1.S1_at10/119+13793558..13795853hypothetical protein
LOC_Os09g23250NANA9+13797350..13800103hypothetical protein
LOC_Os09g23260OsAffx.24317.3.S1_at6/119+13803502..13805670transposon protein, putative, unclassified
LOC_Os09g23260OsAffx.24317.5.S1_x_at4/119+13803502..13805670transposon protein, putative, unclassified
LOC_Os09g23260Os.9332.2.S1_x_at2/119+13803502..13805670transposon protein, putative, unclassified
LOC_Os09g23260Os.9332.2.S1_at1/119+13803502..13805670transposon protein, putative, unclassified
LOC_Os09g23270OsAffx.29982.1.S1_at10/119+13806733..13808173hypothetical protein
LOC_Os09g23280Os.16777.1.S1_at9/119+13812680..13815757pyrrolidone-carboxylate peptidase family protein, expressed
LOC_Os09g23280Os.8636.1.S1_at1/119+13812680..13815757pyrrolidone-carboxylate peptidase family protein, expressed
LOC_Os09g23290OsAffx.17854.1.S1_at11/119+13823698..13824133hypothetical protein
LOC_Os09g23290Os.22698.1.S1_at1/119+13823698..13824133hypothetical protein
LOC_Os09g23300Os.9660.1.S1_at11/119+13830867..13832602Integral membrane protein, expressed
LOC_Os09g23300OsAffx.6372.1.S1_s_at11/119+13830867..13832602Integral membrane protein, expressed
LOC_Os09g23310Os.46715.1.S1_x_at1/119+13837253..13841419retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g23310Os.46715.1.S1_at1/119+13837253..13841419retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g23310OsAffx.27823.1.S1_at1/119+13837253..13841419retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0004219molecular_functionpyroglutamyl-peptidase I activity
GO:0008233molecular_functionpeptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16777.1.S1_at--973--1331Chr09:13814582..13814606 (25 bp)
AGAGGGCTCCCATTGTGCCATCTGA
LOC_Os09g23280
Os.16777.1.S1_at--1119--3791Chr09:13814588..13814612 (25 bp)
CTCCCATTGTGCCATCTGATGGAGG
LOC_Os09g23280
Os.16777.1.S1_at--221--471Chr09:13814601..13814625 (25 bp)
ATCTGATGGAGGAATCTCACGCACA
LOC_Os09g23280
Os.16777.1.S1_at--1092--6231Chr09:13814605..13814629 (25 bp)
GATGGAGGAATCTCACGCACAAGAG
LOC_Os09g23280
Os.16777.1.S1_at--49--3651Chr09:13815525..13815549 (25 bp)
CTTCCCTTCTCGAAGCTCTATCTTG
LOC_Os09g23280
Os.16777.1.S1_at--222--10451Chr09:13815571..13815595 (25 bp)
TTAAGGTTGGAAGCGGACTGAATAA
LOC_Os09g23280
Os.16777.1.S1_at--206--7431Chr09:13815667..13815691 (25 bp)
GTGTTCTTGGTGAAATTCCACTTGT
LOC_Os09g23280
Os.16777.1.S1_at--886--3151NONE
AATTCCACTTGTATGTATGCCCCTA
NONE
Os.16777.1.S1_at--655--6911NONE
GTATGCCCCTACATAACATGATCTA
NONE
Os.16777.1.S1_at--746--711Chr09:13815711..13815735 (25 bp)
ATGATCTAAACATGCATGGGAACTT
LOC_Os09g23280
Os.16777.1.S1_at--783--2491Chr09:13815719..13815743 (25 bp)
AACATGCATGGGAACTTGGTTTTCA
LOC_Os09g23280
Target Sequence 
AGAGGGCTCCCATTGTGCCATCTGATGGAGGAATCTCACGCACAAGAGAGACTACCCTTCCGGTAAATGAGTTAACCAAG
TCACTCCGGAAGACAGGCTATGATGTAATGCCATCAGACNGATGCTGGTCGGTTCGTATGCAACTATGTGTATTATCACN
TCTNTTCGGTTTGCAGAGCAACACNGGCATCAAATCTCTGTTTGTACATGTGCCCCTGTTCTTGACGANTCGATGAGGAG
GTCCAGATGCATTTTGTTGCTTCCCTTCTCGAAGCTCTATCTTGAATNTAGGAANGAAAAATACAANTTTAAGGTTGGAA
GCGGACTGAATAANAATTGTATTGTCATCGATGANTATTGGTCTTGCTCCANCGGGTGTATTTAAGGGGAAATGGCTGCT
TAGAGTGTGTTCTTGGTGAAATTCCACTTGTATGTATGCCCCTACATAACATGATCTAAACATGCATGGGAACTTGGTTT
TCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16777.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis