Browse Element(s) Details


OsAffx.29982.1.S1_at

Description tigr:9637.m01985
TID=OsAffx.29982.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2327010/11hypothetical protein
LOC_Os04g251306/11retrotransposon protein, putative, LINE subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g23230OsAffx.24317.6.S1_x_at10/119+13788427..13791479transposon protein, putative, unclassified
LOC_Os09g23230OsAffx.23650.1.S1_at1/119+13788427..13791479transposon protein, putative, unclassified
LOC_Os09g23240OsAffx.17852.1.S1_at10/119+13793558..13795853hypothetical protein
LOC_Os09g23250NANA9+13797350..13800103hypothetical protein
LOC_Os09g23260OsAffx.24317.3.S1_at6/119+13803502..13805670transposon protein, putative, unclassified
LOC_Os09g23260OsAffx.24317.5.S1_x_at4/119+13803502..13805670transposon protein, putative, unclassified
LOC_Os09g23260Os.9332.2.S1_x_at2/119+13803502..13805670transposon protein, putative, unclassified
LOC_Os09g23260Os.9332.2.S1_at1/119+13803502..13805670transposon protein, putative, unclassified
LOC_Os09g23270OsAffx.29982.1.S1_at10/119+13806733..13808173hypothetical protein
LOC_Os09g23280Os.16777.1.S1_at9/119+13812680..13815757pyrrolidone-carboxylate peptidase family protein, expressed
LOC_Os09g23280Os.8636.1.S1_at1/119+13812680..13815757pyrrolidone-carboxylate peptidase family protein, expressed
LOC_Os09g23290OsAffx.17854.1.S1_at11/119+13823698..13824133hypothetical protein
LOC_Os09g23290Os.22698.1.S1_at1/119+13823698..13824133hypothetical protein
LOC_Os09g23300Os.9660.1.S1_at11/119+13830867..13832602Integral membrane protein, expressed
LOC_Os09g23300OsAffx.6372.1.S1_s_at11/119+13830867..13832602Integral membrane protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29982.1.S1_at--942--491NONE
ATCGGTCTAGAAGTGTTCAGATACT
NONE
OsAffx.29982.1.S1_at--210--5333Chr09:6640756..6640778 (23 bp)
GAAGTGTTCAGATACTATGCAAGGA
NONE
OsAffx.29982.1.S1_at--626--8793Chr09:6640758..6640782 (25 bp)
TGTTCAGATACTATGCAAGGAATCG
NONE
OsAffx.29982.1.S1_at--220--3213Chr09:6640773..6640797 (25 bp)
CAAGGAATCGAGAGGAGACAGCCGA
NONE
OsAffx.29982.1.S1_at--706--2154Chr09:6640790..6640945 (25 bp)
ACAGCCGAGCTTCAGATGAATGGAC
NONE
OsAffx.29982.1.S1_at--656--4513Chr09:6640793..6640948 (25 bp)
GCCGAGCTTCAGATGAATGGACTGT
NONE
OsAffx.29982.1.S1_at--758--653Chr09:6640936..6640960 (25 bp)
ATGAATGGACTGTTTGAGGACTGCA
NONE
OsAffx.29982.1.S1_at--135--1973Chr09:6640944..6640968 (25 bp)
ACTGTTTGAGGACTGCATGTTGGCT
NONE
OsAffx.29982.1.S1_at--3--974Chr09:6640952..6640976 (25 bp)
AGGACTGCATGTTGGCTGCAGCCGT
NONE
OsAffx.29982.1.S1_at--992--4994Chr09:6640958..6640982 (25 bp)
GCATGTTGGCTGCAGCCGTTGCTTC
NONE
OsAffx.29982.1.S1_at--1151--9031Chr09:13806763..13806787 (25 bp)
TGCAGCCGTTGCTTCCTATTTGATA
LOC_Os09g23270
Target Sequence 
ATCGGTCTAGAAGTGTTCAGATACTATGCAAGGAATCGAGAGGAGACAGCCGAGCTTCAGATGAATGGACTGTTTGAGGA
CTGCATGTTGGCTGCAGCCGTTGCTTCCTATTTGATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29982.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis