Browse Element(s) Details


OsAffx.17854.1.S1_at

Description tigr:9637.m01987
TID=OsAffx.17854.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2329011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g23250NANA9+13797350..13800103hypothetical protein
LOC_Os09g23260OsAffx.24317.3.S1_at6/119+13803502..13805670transposon protein, putative, unclassified
LOC_Os09g23260OsAffx.24317.5.S1_x_at4/119+13803502..13805670transposon protein, putative, unclassified
LOC_Os09g23260Os.9332.2.S1_x_at2/119+13803502..13805670transposon protein, putative, unclassified
LOC_Os09g23260Os.9332.2.S1_at1/119+13803502..13805670transposon protein, putative, unclassified
LOC_Os09g23270OsAffx.29982.1.S1_at10/119+13806733..13808173hypothetical protein
LOC_Os09g23280Os.16777.1.S1_at9/119+13812680..13815757pyrrolidone-carboxylate peptidase family protein, expressed
LOC_Os09g23280Os.8636.1.S1_at1/119+13812680..13815757pyrrolidone-carboxylate peptidase family protein, expressed
LOC_Os09g23290OsAffx.17854.1.S1_at11/119+13823698..13824133hypothetical protein
LOC_Os09g23290Os.22698.1.S1_at1/119+13823698..13824133hypothetical protein
LOC_Os09g23300Os.9660.1.S1_at11/119+13830867..13832602Integral membrane protein, expressed
LOC_Os09g23300OsAffx.6372.1.S1_s_at11/119+13830867..13832602Integral membrane protein, expressed
LOC_Os09g23310Os.46715.1.S1_x_at1/119+13837253..13841419retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g23310Os.46715.1.S1_at1/119+13837253..13841419retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g23310OsAffx.27823.1.S1_at1/119+13837253..13841419retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g23320Os.52609.1.S1_at1/119+13845784..13846985retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g23330NANA9+13847140..13847744retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17854.1.S1_at--731--6191Chr09:13824079..13824103 (25 bp)
GAGGCATCAGCTTTACCACCTTCTC
LOC_Os09g23290
OsAffx.17854.1.S1_at--672--10591Chr09:13824059..13824083 (25 bp)
TTCTCCGTCATGCATGGCTACCGAA
LOC_Os09g23290
OsAffx.17854.1.S1_at--1012--9491Chr09:13824058..13824082 (25 bp)
TCTCCGTCATGCATGGCTACCGAAT
LOC_Os09g23290
OsAffx.17854.1.S1_at--387--9291Chr09:13824056..13824080 (25 bp)
TCCGTCATGCATGGCTACCGAATCT
LOC_Os09g23290
OsAffx.17854.1.S1_at--122--3731Chr09:13824042..13824066 (25 bp)
CTACCGAATCTGACCTCTTGAGGTC
LOC_Os09g23290
OsAffx.17854.1.S1_at--428--5831Chr09:13824031..13824055 (25 bp)
GACCTCTTGAGGTCATGGCTCACCG
LOC_Os09g23290
OsAffx.17854.1.S1_at--1098--3751Chr09:13824028..13824052 (25 bp)
CTCTTGAGGTCATGGCTCACCGGAT
LOC_Os09g23290
OsAffx.17854.1.S1_at--294--10771Chr09:13824025..13824049 (25 bp)
TTGAGGTCATGGCTCACCGGATCCA
LOC_Os09g23290
OsAffx.17854.1.S1_at--995--851Chr09:13824017..13824041 (25 bp)
ATGGCTCACCGGATCCACTGGGATG
LOC_Os09g23290
OsAffx.17854.1.S1_at--347--4831Chr09:13824016..13824038 (23 bp)
GCTCACCGGATCCACTGGGATGGAT
LOC_Os09g23290
OsAffx.17854.1.S1_at--799--9671Chr09:13824016..13824036 (21 bp)
TCACCGGATCCACTGGGATGGATTA
LOC_Os09g23290
Target Sequence 
GAGGCATCAGCTTTACCACCTTCTCCGTCATGCATGGCTACCGAATCTGACCTCTTGAGGTCATGGCTCACCGGATCCAC
TGGGATGGATTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17854.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis