Browse Element(s) Details


Os.9660.1.S1_at

Description gb:AK071589.1
DB_XREF= gi:32981612
TID=Os.9660.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9660 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023101O19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023101O19, full insert sequence.
FL= gb:AK071589.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2330011/11Integral membrane protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g23270OsAffx.29982.1.S1_at10/119+13806733..13808173hypothetical protein
LOC_Os09g23280Os.16777.1.S1_at9/119+13812680..13815757pyrrolidone-carboxylate peptidase family protein, expressed
LOC_Os09g23280Os.8636.1.S1_at1/119+13812680..13815757pyrrolidone-carboxylate peptidase family protein, expressed
LOC_Os09g23290OsAffx.17854.1.S1_at11/119+13823698..13824133hypothetical protein
LOC_Os09g23290Os.22698.1.S1_at1/119+13823698..13824133hypothetical protein
LOC_Os09g23300Os.9660.1.S1_at11/119+13830867..13832602Integral membrane protein, expressed
LOC_Os09g23300OsAffx.6372.1.S1_s_at11/119+13830867..13832602Integral membrane protein, expressed
LOC_Os09g23310Os.46715.1.S1_x_at1/119+13837253..13841419retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g23310Os.46715.1.S1_at1/119+13837253..13841419retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g23310OsAffx.27823.1.S1_at1/119+13837253..13841419retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g23320Os.52609.1.S1_at1/119+13845784..13846985retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g23330NANA9+13847140..13847744retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g23340Os.39238.1.A1_at11/119+13854139..13855577expressed protein
LOC_Os09g23340OsAffx.29984.1.S1_s_at10/119+13854139..13855577expressed protein
LOC_Os09g23340OsAffx.29984.1.S1_at2/119+13854139..13855577expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9660.1.S1_at--957--7331Chr09:13832316..13832340 (25 bp)
GTGCAGTCCATCTAAGTACTGTAGC
LOC_Os09g23300
Os.9660.1.S1_at--969--9271Chr09:13832347..13832371 (25 bp)
TCCGGCTGCAGGCATCCAAGTAAAT
LOC_Os09g23300
Os.9660.1.S1_at--43--191Chr09:13832422..13832446 (25 bp)
ATTTATGTACGTTTGCTGCGTGCTT
LOC_Os09g23300
Os.9660.1.S1_at--613--6851Chr09:13832432..13832456 (25 bp)
GTTTGCTGCGTGCTTGTAGTGTATT
LOC_Os09g23300
Os.9660.1.S1_at--658--731Chr09:13832459..13832483 (25 bp)
ATGTTCTGGAGGTGTATCCGTAGTT
LOC_Os09g23300
Os.9660.1.S1_at--101--7711Chr09:13832469..13832493 (25 bp)
GGTGTATCCGTAGTTAGCCCTAAGT
LOC_Os09g23300
Os.9660.1.S1_at--332--1211Chr09:13832480..13832504 (25 bp)
AGTTAGCCCTAAGTGTACCATGTAC
LOC_Os09g23300
Os.9660.1.S1_at--1007--7431Chr09:13832492..13832516 (25 bp)
GTGTACCATGTACACGAGTGTAATC
LOC_Os09g23300
Os.9660.1.S1_at--182--7451Chr09:13832509..13832533 (25 bp)
GTGTAATCACTCATTTTATATCGTC
LOC_Os09g23300
Os.9660.1.S1_at--856--10191Chr09:13832525..13832549 (25 bp)
TATATCGTCTTCTATTTTGGCTCCC
LOC_Os09g23300
Os.9660.1.S1_at--748--8411Chr09:13832542..13832566 (25 bp)
TGGCTCCCTTTTTTATATTCGGTTG
LOC_Os09g23300
Target Sequence 
GTGCAGTCCATCTAAGTACTGTAGCCGGAGCTCCGGCTGCAGGCATCCAAGTAAATGTAATTAATTTAGCAGATCCAATA
AGTATTGCAGAAATGTATGTATAAGTATTTATGTACGTTTGCTGCGTGCTTGTAGTGTATTANATGTTCTGGAGGTGTAT
CCGTAGTTAGCCCTAAGTGTACCATGTACACGAGTGTAATCACTCATTTTATATCGTCTTCTATTTTGGCTCCCTTTTTT
ATATTCGGTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9660.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis