Browse Element(s) Details


Os.39289.1.S1_at

Description gb:CF293187
DB_XREF= gi:33662220
DB_XREF=30DGS--02-E12.g1
CLONE=30DGS--02-E12
TID=Os.39289.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.39289 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g535201/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g53496NANA4+31635367..31643224NB-ARC domain containing protein, expressed
LOC_Os04g53502Os.14269.1.S1_x_at9/114+31645122..31648340expressed protein
LOC_Os04g53510Os.49169.1.S1_at10/114+31656664..31660643F-box domain containing protein, expressed
LOC_Os04g53520Os.49330.1.S1_at10/114+31661475..31675514expressed protein
LOC_Os04g53520OsAffx.10811.1.A1_at6/114+31661475..31675514expressed protein
LOC_Os04g53520Os.39289.1.S1_at1/114+31661475..31675514expressed protein
LOC_Os04g53530Os.24287.1.A1_at11/114+31676191..31681094expressed protein
LOC_Os04g53540Os.12432.1.S1_a_at11/114+31681144..31686947START domain containing protein, expressed
LOC_Os04g53540Os.57415.1.S1_x_at2/114+31681144..31686947START domain containing protein, expressed
LOC_Os04g53540Os.10246.4.S1_x_at2/114+31681144..31686947START domain containing protein, expressed
LOC_Os04g53540OsAffx.29023.1.S1_x_at2/114+31681144..31686947START domain containing protein, expressed
LOC_Os04g53544NANA4+31691189..31691506transposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.39289.1.S1_at--673--10112Chr07:18950589..18950613 (25 bp)
TATGGTGGCTCTGCCATTCTGCTAC
NONE
Os.39289.1.S1_at--547--111NONE
ATTCTGCTACTAACAGAGCCCGAGG
NONE
Os.39289.1.S1_at--246--10851Chr07:18930791..18930815 (25 bp)
TTGGACCTACATATGAGTTAAGCAG
NONE
Os.39289.1.S1_at--342--3852Chr05:3206606..3207072 (25 bp)
CTGAACAGGGCCTTACCCTACTCAT
NONE
Os.39289.1.S1_at--672--10471Chr07:18930520..18930544 (25 bp)
TTACCCTACTCATCACTGCACTGTT
NONE
Os.39289.1.S1_at--817--1971Chr07:18930506..18930530 (25 bp)
ACTGCACTGTTCTCCGTATTGGGAA
NONE
Os.39289.1.S1_at--522--10231Chr07:18930490..18930514 (25 bp)
TATTGGGAAGCCTCAGCTATGGTGA
NONE
Os.39289.1.S1_at--742--811Chr07:18930472..18930496 (25 bp)
ATGGTGACACCATCCTCAATGAGAG
NONE
Os.39289.1.S1_at--417--6171Chr07:18930441..18930465 (25 bp)
GAGGATGAACCTAGGCCAGCACACC
NONE
Os.39289.1.S1_at--1041--3391Chr07:18930425..18930449 (25 bp)
CAGCACACCATGTTTCAACCTTAAA
NONE
Os.39289.1.S1_at--73--9951Chr07:18930399..18930423 (25 bp)
TACCAAATCTGGTTGCACGAAAATA
NONE
Target Sequence 
TATGGTGGCTCTGCCATTCTGCTACTAACAGAGCCCGAGGGAGTTGCGGATCCAAGCGAAGGCCAAGACCCGCAAGACTT
TGAGCAAGGATCAAATCAACTGGCACGCTCACGAACCTAAAAGCAAGATTTTGGACCTACATATGAGTTAAGCAGATCTC
CAGGCCAGTGTGTGTTTTTCACATCAACAGAATCTTTTAAGCCTAATTACTCCATGATTTGACAATGTGGCGCTACAGTA
AATATTTGCTAATGACGGATTAATTAGGCTTAATAAATTCATCNTCGCAGTTTACAAGCAGAATATGTAATTNTGTTTTG
TTATTAAATCTACGTTTAATACTTCAAATTTANTGTCCGTATATTCAATATGACACGCCAAAACTTTTTACCCTGAACAG
GGCCTTACCCTACTCATCACTGCACTGTTCTCCGTATTGGGAAGCCTCAGCTATGGTGACACCATCCTCAATGAGAGGAG
GAGGAGGATGAACCTAGGCCAGCACACCATGTTTCAACCTTAAATTACCAAATCTGGTTGCACGAAAATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.39289.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis