Browse Element(s) Details


Os.39431.1.S1_x_at

Description gb:NM_187285.1
DB_XREF= gi:34901655
GEN=P0640E12.22
TID=Os.39431.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.39431 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0640E12.22 (P0640E12.22), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0640E12.22 (P0640E12.22), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2950011/11retrotransposon, putative, centromere-specific
LOC_Os07g185402/11hypothetical protein
LOC_Os09g192292/11Protein kinase domain containing protein, expressed
LOC_Os09g304821/11transposon protein, putative, unclassified
LOC_Os04g430201/11protein kinase family protein, putative, expressed
LOC_Os01g389001/11Protein kinase domain containing protein
LOC_Os03g332501/11retrotransposon protein, putative, unclassified
LOC_Os11g219101/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g29460NANA7+17299579..17303314retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g29470Os.45957.4.S1_x_at6/117+17303576..17304803retrotransposon protein, putative, unclassified
LOC_Os07g29480OsAffx.10091.1.S1_at11/117+17305202..17306560transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g29490Os.46012.3.S1_x_at11/117+17313852..17314870retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g29490Os.46012.2.S1_x_at8/117+17313852..17314870retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g29490Os.46012.3.S1_at8/117+17313852..17314870retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g29490Os.27088.1.A1_x_at4/117+17313852..17314870retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g29500Os.39431.1.S1_x_at11/117+17316285..17320113retrotransposon, putative, centromere-specific
LOC_Os07g29500Os.39431.1.S1_at11/117+17316285..17320113retrotransposon, putative, centromere-specific
LOC_Os07g29500OsAffx.25367.1.S1_at1/117+17316285..17320113retrotransposon, putative, centromere-specific
LOC_Os07g29510NANA7+17322638..17323463hypothetical protein
LOC_Os07g29520Os.49985.1.S1_at1/117+17328358..17332727retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g29530OsAffx.28659.1.S1_at11/117+17333241..17333705hypothetical protein
LOC_Os07g29540OsAffx.14659.1.S1_at3/117+17339956..17342125retrotransposon protein, putative, unclassified
LOC_Os07g29540OsAffx.30032.3.S1_at1/117+17339956..17342125retrotransposon protein, putative, unclassified
LOC_Os07g29540OsAffx.30032.1.S1_at1/117+17339956..17342125retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0004672molecular_functionprotein kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.39431.1.S1_x_at--387--3297Chr11:8306874..8306893 (20 bp)
CAGAGAGGTTTAGACTTCCCGTTGT
NONE
Os.39431.1.S1_x_at--391--10018Chr11:8306879..8306903 (25 bp)
TAGACTTCCCGTTGTTTCGGAGGAT
NONE
Os.39431.1.S1_x_at--693--4558Chr11:8306881..8306905 (25 bp)
GACTTCCCGTTGTTTCGGAGGATCG
NONE
Os.39431.1.S1_x_at--1062--934Chr11:13117567..13117591 (25 bp)
AGGATCGTCCGTTCGTTGGAGAAGT
NONE
Os.39431.1.S1_x_at--706--7257Chr05:8136755..8136774 (20 bp)
GTCCGTTCGTTGGAGAAGTTCCTGA
NONE
Os.39431.1.S1_x_at--964--28119Chr11:10503625..10503649 (25 bp)
AAGTTCCTGAAGACGAATTGAAGAC
NONE
Os.39431.1.S1_x_at--706--57921Chr12:9457284..9457305 (22 bp)
GACGAATTGAAGACGCTTGTTTTTT
NONE
Os.39431.1.S1_x_at--1150--5216Chr08:25440442..25440462 (21 bp)
GAATTTCTGGGCATGACAGGCATCG
NONE
Os.39431.1.S1_x_at--245--10611Chr07:17316352..17316376 (25 bp)
TTCTGGGCATGACAGGCATCGAGTC
LOC_Os07g29500
Os.39431.1.S1_x_at--761--827175Chr12:4333459..4333483 (25 bp)
GGCATCGAGTCACCTACACATGAAA
NONE
Os.39431.1.S1_x_at--927--937208Chr12:4333463..4333487 (25 bp)
TCGAGTCACCTACACATGAAATAAA
NONE
Target Sequence 
CAGAGAGGTTTAGACTTCCCGTTGTTTCGGAGGATCGTCCGTTCGTTGGAGAAGTTCCTGAAGACGAATTGAAGACGCTT
GTTTTTTGTGTACCTCGGCTAATTCCTGGACGAGGATTTTATGCACAAATGAGTTCGGAAATTACTAGTGAATTTCTGGG
CATGACAGGCATCGAGTCACCTACACATGAAATAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.39431.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis