Browse Element(s) Details


Os.39637.1.A1_s_at

Description gb:CF313787
DB_XREF= gi:33685548
DB_XREF=HD--02-B02.g1
CLONE=HD--02-B02
TID=Os.39637.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.39637 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_176869.1 (A.thaliana) unknown protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1700011/11Glycerophosphoryl diester phosphodiesterase family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g16970OsAffx.6308.1.S1_s_at11/119+10372584..10374583hypothetical protein
LOC_Os09g16980OsAffx.6309.1.S1_at10/119+10377531..10380849Calcium binding EGF domain containing protein
LOC_Os09g16990OsAffx.29881.1.S1_at11/119+10384915..10385752expressed protein
LOC_Os09g17000Os.39637.1.A1_s_at11/119+10398245..10404686Glycerophosphoryl diester phosphodiesterase family protein
LOC_Os09g17000OsAffx.29883.1.S1_at10/119+10398245..10404686Glycerophosphoryl diester phosphodiesterase family protein
LOC_Os09g17000Os.39637.1.A1_at8/119+10398245..10404686Glycerophosphoryl diester phosphodiesterase family protein
LOC_Os09g17000OsAffx.25903.3.S1_at1/119+10398245..10404686Glycerophosphoryl diester phosphodiesterase family protein
LOC_Os09g17010OsAffx.6310.1.S1_at11/119+10406388..10409702lectin receptor kinase 1, putative
LOC_Os09g17010OsAffx.17536.1.S1_at1/119+10406388..10409702lectin receptor kinase 1, putative
LOC_Os09g17020NANA9+10411381..10415912retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006071biological_processglycerol metabolism
GO:0031225cellular_componentanchored to membrane
GO:0008889molecular_functionglycerophosphodiester phosphodiesterase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.39637.1.A1_s_at--167--2151Chr09:10403231..10403255 (25 bp)
ACAGAAGCTTGGCTCTGTGAAGTAC
LOC_Os09g17000
Os.39637.1.A1_s_at--630--3551Chr09:10403202..10403226 (25 bp)
CATCACCTGAACTAGGTTTCCTGCA
LOC_Os09g17000
Os.39637.1.A1_s_at--183--10071Chr09:10403190..10403214 (25 bp)
TAGGTTTCCTGCAAAGTTTATCGGG
LOC_Os09g17000
Os.39637.1.A1_s_at--1114--9291Chr09:10403174..10403198 (25 bp)
TTTATCGGGAGGCATTAATCGTGAA
LOC_Os09g17000
Os.39637.1.A1_s_at--722--7351Chr09:10403149..10403173 (25 bp)
GTGAATCTAGTGTTCTGCTTTCTTG
LOC_Os09g17000
Os.39637.1.A1_s_at--1134--3151Chr09:10403051..10403075 (25 bp)
AATTGCTTCAGGTATAATGGTTCCC
LOC_Os09g17000
Os.39637.1.A1_s_at--596--10191Chr09:10402993..10403017 (25 bp)
TATATTCAGCTTCACACACAGATTG
LOC_Os09g17000
Os.39637.1.A1_s_at--794--7271Chr09:10402969..10402993 (25 bp)
GTCCAAGAAGCTCACAATGCAGGTT
LOC_Os09g17000
Os.39637.1.A1_s_at--1019--8492Chr09:10402913..10402937 (25 bp)
TGGAATTTTTCCCTACAACTACAGT
LOC_Os09g17000
Os.39637.1.A1_s_at--997--3571Chr09:10402863..10402887 (25 bp)
CATTTGTCAGCGACGGTGGCTTTAG
LOC_Os09g17000
Os.39637.1.A1_s_at--1084--9811Chr09:10402824..10402848 (25 bp)
TAACAGATTTCCCACTTACTGCATC
LOC_Os09g17000
Target Sequence 
ACAGAAGCTTGGCTCTGTGAAGTACATCTCATCACCTGAACTAGGTTTCCTGCAAAGTTTATCGGGAGGCATTAATCGTG
AAGTGAATCTAGTGTTCTGCTTTCTTGANAAAGCCCTGTCTGATCCTTCNACAAATNAAACATATNACTATATGTTGAGT
AACTTGACATTTATTAAGACAATTGCTTCAGGTATAATGGTTCCCAAAAACTATATATGGCCAGTAACAAGTGATAATTA
TATTCAGCTTCACACACAGATTGTCCAAGAAGCTCACAATGCAGGTTTAGAAATATATGCGTCTGATTTTTCAAACGATG
GAATTTTTCCCTACAACTACAGTTATGATCCTTTGGGGGAATATCTGTCATTTGTCAGCGACGGTGGCTTTAGTGTTGAT
GGTGTATTAACAGATTTCCCACTTACTGCATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.39637.1.A1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis