Browse Element(s) Details


OsAffx.29883.1.S1_at

Description tigr:9637.m01440
TID=OsAffx.29883.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1700010/11Glycerophosphoryl diester phosphodiesterase family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g16970OsAffx.6308.1.S1_s_at11/119+10372584..10374583hypothetical protein
LOC_Os09g16980OsAffx.6309.1.S1_at10/119+10377531..10380849Calcium binding EGF domain containing protein
LOC_Os09g16990OsAffx.29881.1.S1_at11/119+10384915..10385752expressed protein
LOC_Os09g17000Os.39637.1.A1_s_at11/119+10398245..10404686Glycerophosphoryl diester phosphodiesterase family protein
LOC_Os09g17000OsAffx.29883.1.S1_at10/119+10398245..10404686Glycerophosphoryl diester phosphodiesterase family protein
LOC_Os09g17000Os.39637.1.A1_at8/119+10398245..10404686Glycerophosphoryl diester phosphodiesterase family protein
LOC_Os09g17000OsAffx.25903.3.S1_at1/119+10398245..10404686Glycerophosphoryl diester phosphodiesterase family protein
LOC_Os09g17010OsAffx.6310.1.S1_at11/119+10406388..10409702lectin receptor kinase 1, putative
LOC_Os09g17010OsAffx.17536.1.S1_at1/119+10406388..10409702lectin receptor kinase 1, putative
LOC_Os09g17020NANA9+10411381..10415912retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006071biological_processglycerol metabolism
GO:0031225cellular_componentanchored to membrane
GO:0008889molecular_functionglycerophosphodiester phosphodiesterase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29883.1.S1_at--609--10771Chr09:10400903..10401150 (25 bp)
TTGAGACCCAAAATATCTTCCCCGC
LOC_Os09g17000
OsAffx.29883.1.S1_at--1025--9571Chr09:10400888..10400912 (25 bp)
TCTTCCCCGCTGAGTGATTATGTTA
LOC_Os09g17000
OsAffx.29883.1.S1_at--171--6451Chr09:10400673..10400793 (25 bp)
GATCACCATCGAGAATGCCGCATTT
LOC_Os09g17000
OsAffx.29883.1.S1_at--418--6651Chr09:10400624..10400648 (25 bp)
GTTGTTGATCTTGTAACTACTGCCT
LOC_Os09g17000
OsAffx.29883.1.S1_at--207--2031Chr09:10400609..10400633 (25 bp)
ACTACTGCCTTGAGTCATGCTGGAT
LOC_Os09g17000
OsAffx.29883.1.S1_at--954--10351NONE
TTTTAGTCCCGTGAACTCTTGTACG
NONE
OsAffx.29883.1.S1_at--914--1311Chr09:10398509..10398533 (25 bp)
AGATGGCAAGCCTCGGTCCATGAAG
LOC_Os09g17000
OsAffx.29883.1.S1_at--115--5591Chr09:10398478..10398502 (25 bp)
GAAATCGGCGGTCTCGTGCAAACAC
LOC_Os09g17000
OsAffx.29883.1.S1_at--950--1491Chr09:10398419..10398443 (25 bp)
AGCACTTGTGCTCAAACCATCGGAC
LOC_Os09g17000
OsAffx.29883.1.S1_at--912--7291Chr09:10398343..10398367 (25 bp)
GTGCCCAAGACTACTGGCTACTCAT
LOC_Os09g17000
OsAffx.29883.1.S1_at--35--3851Chr09:10398279..10398303 (25 bp)
CTGCAATTAGCAGCACAGGCATTTT
LOC_Os09g17000
Target Sequence 
TTGAGACCCAAAATATCTTCCCCGCTGAGTGATTATGTTATGTTACGGAATCCAAGGTACACAAATCATGGCAAGTTTTT
GAAGTTATCTGAATTTCTGACATATGCGAAGGACAAGGAGTTGTCTGGCATCATGATCACCATCGAGAATGCCGCATTTA
TGGCAGCATCATTAGGATTTGATGTTGTTGATCTTGTAACTACTGCCTTGAGTCATGCTGGATATAACAACACTACCACC
ACCACCGGTGGAGAAGTGCTTTTTAGTCCCGTGAACTCTTGTACGGGTCTGGGAGATGGCAAGCCTCGGTCCATGAAGGC
TGTCGAAATCGGCGGTCTCGTGCAAACACTCCAAGACAAAGCCAGGCGGCCGGCTCGGGCACCAGCACTTGTGCTCAAAC
CATCGGACGTCGTTGAGCCGCCTCTCCCGGCTGCGGCTGCGGCTGCGGCTGCGGCTGCCGTGCCCAAGACTACTGGCTAC
TCATCACCACGTTCTGATGCTCCTCCTCCTGCTGCTGCTGTAACTGCAATTAGCAGCACAGGCATTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29883.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis