Browse Element(s) Details


OsAffx.6310.1.S1_at

Description tigr:9637.m01441
TID=OsAffx.6310.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=receptor lectin kinase-like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1701011/11lectin receptor kinase 1, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g16990OsAffx.29881.1.S1_at11/119+10384915..10385752expressed protein
LOC_Os09g17000Os.39637.1.A1_s_at11/119+10398245..10404686Glycerophosphoryl diester phosphodiesterase family protein
LOC_Os09g17000OsAffx.29883.1.S1_at10/119+10398245..10404686Glycerophosphoryl diester phosphodiesterase family protein
LOC_Os09g17000Os.39637.1.A1_at8/119+10398245..10404686Glycerophosphoryl diester phosphodiesterase family protein
LOC_Os09g17000OsAffx.25903.3.S1_at1/119+10398245..10404686Glycerophosphoryl diester phosphodiesterase family protein
LOC_Os09g17010OsAffx.6310.1.S1_at11/119+10406388..10409702lectin receptor kinase 1, putative
LOC_Os09g17010OsAffx.17536.1.S1_at1/119+10406388..10409702lectin receptor kinase 1, putative
LOC_Os09g17020NANA9+10411381..10415912retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6310.1.S1_at--105--6191Chr09:10406420..10406444 (25 bp)
GAGGAACCCTGACCTAGGCTTTCGA
LOC_Os09g17010
OsAffx.6310.1.S1_at--942--10031Chr09:10406479..10406503 (25 bp)
TAGAGCTCCACATACCAAGCAACTT
LOC_Os09g17010
OsAffx.6310.1.S1_at--973--1771Chr09:10409256..10409277 (22 bp)
ACCGGTACAACATCGCGCTTGGGCT
LOC_Os09g17010
OsAffx.6310.1.S1_at--72--4731Chr09:10409275..10409299 (25 bp)
GCTGGGCTCCGCATTAGATTGCAAT
LOC_Os09g17010
OsAffx.6310.1.S1_at--603--3091Chr09:10409297..10409321 (25 bp)
AATACCTCCAAGACTGCAACCGGTG
LOC_Os09g17010
OsAffx.6310.1.S1_at--28--7791Chr09:10409318..10409342 (25 bp)
GGTGCGTCGTGCACGGGTACATCAA
LOC_Os09g17010
OsAffx.6310.1.S1_at--929--2692Chr12:25629150..25629173 (24 bp)
AAGCTCGGTGACTTCGGGCTAGCTC
NONE
OsAffx.6310.1.S1_at--1083--8971Chr09:10409424..10409448 (25 bp)
TGAACGCCGAACGACCGTGGGATTA
LOC_Os09g17010
OsAffx.6310.1.S1_at--1122--6551Chr09:10409444..10409468 (25 bp)
GATTACATCGATCCGGAGTTCGTCA
LOC_Os09g17010
OsAffx.6310.1.S1_at--837--8911Chr09:10409584..10409608 (25 bp)
TGAGCTTTGTCCGTGGCATGTATGA
LOC_Os09g17010
OsAffx.6310.1.S1_at--686--10111Chr09:10409604..10409628 (25 bp)
TATGACCGTGGCAACGTGCTGGACG
LOC_Os09g17010
Target Sequence 
GAGGAACCCTGACCTAGGCTTTCGACTTCAACACCCTCACCCACTTGTCGTCGCCATCCTAGAGCTCCACATACCAAGCA
ACTTCTACTATCCACAGCTCCACCGCACTGGCGCCCCACCACCGGTACAACATCGCGCTTGGGCTGGGCTCCGCATTAGA
TTGCAATACCTCCAAGACTGCAACCGGTGCGTCGTGCACGGGTACATCAAACCGGCGAATATAATGCTCGACGCGTCACG
CAACGCCAAGCTCGGTGACTTCGGGCTAGCTCGTCTCGTCGACCACGGAGCTGAACGCCGAACGACCGTGGGATTACATC
GATCCGGAGTTCGTCAACAGCCACAGGCCCTGCGTCGAGTCGGACGTGTACAGCTTCGGCGTGGTGCTACTGGAGATCGC
CCGCGAGCCCCCGCGCTGCTGAGCTTTGTCCGTGGCATGTATGACCGTGGCAACGTGCTGGACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6310.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis