Browse Element(s) Details


Os.39747.1.S1_at

Description gb:AK111880.1
DB_XREF= gi:37988543
TID=Os.39747.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.39747 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033046K12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033046K12, full insert sequence.
FL= gb:AK111880.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0993011/11Identical to a putative G-protein-coupled receptor from , putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g09890Os.8453.1.S1_a_at11/116+5035129..5040240Smr domain containing protein, expressed
LOC_Os06g09900Os.12115.1.S1_at11/116+5043932..5045020expressed protein
LOC_Os06g09910Os.48661.1.S1_at11/116+5053304..5055835Phosphopantothenoylcysteine decarboxylase, putative, expressed
LOC_Os06g09920NANA6+5056623..5057036hypothetical protein
LOC_Os06g09930Os.39747.1.S1_at11/116+5059665..5063953Identical to a putative G-protein-coupled receptor from , putative, expressed
LOC_Os06g09940OsAffx.27540.1.S1_at11/116+5067260..5067577hypothetical protein
LOC_Os06g09950OsAffx.15341.1.S1_at11/116+5070901..5071113hypothetical protein
LOC_Os06g09960OsAffx.27541.1.S1_at10/116+5081730..5083092expressed protein
LOC_Os06g09960OsAffx.24432.1.S1_at3/116+5081730..5083092expressed protein
LOC_Os06g09970OsAffx.4783.1.S1_at11/116+5084604..5085091hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0000278biological_processmitotic cell cycle
GO:0009735biological_processresponse to cytokinin stimulus
GO:0009908biological_processflower development
GO:0010231biological_processmaintenance of dormancy
GO:0004930molecular_functionG-protein coupled receptor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.39747.1.S1_at--440--1011Chr06:5062798..5062822 (25 bp)
AGGTTCATGGGCTTTCGCAACAATC
LOC_Os06g09930
Os.39747.1.S1_at--1149--671Chr06:5062833..5062857 (25 bp)
ATGACTTTGCTAATCCAGGCCACAA
LOC_Os06g09930
Os.39747.1.S1_at--795--6511Chr06:5062858..5062882 (25 bp)
GATATTTTGGCTCTCTATTCTTGAT
LOC_Os06g09930
Os.39747.1.S1_at--519--7571Chr06:5063359..5063383 (25 bp)
GGGCTTTTTAATTCCATCGCTTATG
LOC_Os06g09930
Os.39747.1.S1_at--245--1411Chr06:5063419..5063560 (25 bp)
AGACTTGACATGTATCTACCTGAGA
LOC_Os06g09930
Os.39747.1.S1_at--933--5471Chr06:5063614..5063638 (25 bp)
GAACTTACTTCTCTTATTGTCGATG
LOC_Os06g09930
Os.39747.1.S1_at--17--5011Chr06:5063760..5063784 (25 bp)
GCATGTGGAATAGTTCCCCTGCGGT
LOC_Os06g09930
Os.39747.1.S1_at--1092--4671Chr06:5063780..5063804 (25 bp)
GCGGTCCTTTGTTGATTGCCTTGAA
LOC_Os06g09930
Os.39747.1.S1_at--218--5351Chr06:5063825..5063849 (25 bp)
GAAGTTGCATTGTCCGGAGTACATA
LOC_Os06g09930
Os.39747.1.S1_at--340--691Chr06:5063886..5063910 (25 bp)
ATGACGTTGATCTGTATCCCTTTTT
LOC_Os06g09930
Os.39747.1.S1_at--957--8551Chr06:5063914..5063938 (25 bp)
TGGATGTATCAGTGTACCACCCTCT
LOC_Os06g09930
Target Sequence 
AGGTTCATGGGCTTTCGCAACAATCAATCGTGTGCATGACTTTGCTAATCCAGGCCACAAGATATTTTGGCTCTCTATTC
TTGATGTTGGGNTTTGCCGGACTTATGGGGCTTTTTAATTCCATCGCTTATGGGCTCAACTCGTCAGTGCGCAGAGCGAT
TGCTGAAAGACTTGACATGTATCTACCTGAGAGATTTAAAAGGAGCCTCCCTACTCTGACACGATTTAAAAGTCAGCAAG
AAAATGAACTTACTTCTCTTATTGTCGATGCGAGTAACACATAGGAATTTTTCTAGCACACTAAGTTTGTTCATATCTTG
TGGGTTCTTCAATCCAGAAAGGGTGTATGACATTACTGTAGAGCCAGATGTTTAGCATTAACCATTTGTTAGCATGTGGA
ATAGTTCCCCTGCGGTCCTTTGTTGATTGCCTTGAACACGAGCAGTGTAATATATTGAAGTTGCATTGTCCGGAGTACAT
AAGAGATTAGGAGATAGCCAGAGTTGTAGATACTACTATGACGTTGATCTGTATCCCTTTTTTTGTGGATGTATCAGTGT
ACCACCCTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.39747.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis