Browse Element(s) Details


Os.39887.1.S1_at

Description gb:AK121022.1
DB_XREF= gi:37990645
TID=Os.39887.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.39887 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023049I09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023049I09, full insert sequence.
FL= gb:AK121022.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g407809/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g40740OsAffx.27264.1.S1_s_at11/115+23800217..23802733L-ascorbate oxidase homolog precursor, putative, expressed
LOC_Os05g40740OsAffx.27264.1.S1_at11/115+23800217..23802733L-ascorbate oxidase homolog precursor, putative, expressed
LOC_Os05g40750Os.37083.2.S1_at2/115+23804950..23806506retrotransposon protein, putative, unclassified
LOC_Os05g40760OsAffx.22940.1.S1_s_at11/115+23807432..23813316Transposable element protein, putative, MuDR
LOC_Os05g40760Os.35344.3.S1_x_at11/115+23807432..23813316Transposable element protein, putative, MuDR
LOC_Os05g40760OsAffx.22940.2.S1_s_at11/115+23807432..23813316Transposable element protein, putative, MuDR
LOC_Os05g40760OsAffx.22940.5.S1_x_at10/115+23807432..23813316Transposable element protein, putative, MuDR
LOC_Os05g40760OsAffx.22940.5.S1_at10/115+23807432..23813316Transposable element protein, putative, MuDR
LOC_Os05g40760Os.35344.18.S1_x_at10/115+23807432..23813316Transposable element protein, putative, MuDR
LOC_Os05g40760OsAffx.22940.2.S1_at9/115+23807432..23813316Transposable element protein, putative, MuDR
LOC_Os05g40760OsAffx.22940.3.S1_x_at9/115+23807432..23813316Transposable element protein, putative, MuDR
LOC_Os05g40760OsAffx.31552.2.S1_at1/115+23807432..23813316Transposable element protein, putative, MuDR
LOC_Os05g40770Os.46287.1.S1_a_at11/115+23816223..23822364Protein kinase domain containing protein, expressed
LOC_Os05g40770Os.52122.1.S1_at1/115+23816223..23822364Protein kinase domain containing protein, expressed
LOC_Os05g40780Os.39887.1.S1_at9/115+23824650..23827389expressed protein
LOC_Os05g40790Os.13515.1.S1_at11/115+23833218..23840358NOT2/NOT3/NOT5 family protein, expressed
LOC_Os05g40800OsAffx.15050.1.S1_at11/115+23842764..23845047hypothetical protein
LOC_Os05g40810OsAffx.4581.1.S1_at11/115+23848492..23854653BRCA1 C Terminus domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.39887.1.S1_at--853--7231Chr05:23825797..23825821 (25 bp)
GTCGCGGAACTTACTGCACTTATTG
LOC_Os05g40780
Os.39887.1.S1_at--684--1951Chr05:23825764..23825788 (25 bp)
ACTGTCCATCGTGTTTGCATCACAA
LOC_Os05g40780
Os.39887.1.S1_at--69--391NONE
ATCACAACATGCTTCCTGTTTTCTG
NONE
Os.39887.1.S1_at--1133--8771Chr05:23824951..23824975 (25 bp)
TGTTTTCTGCTGGATTTCTCTACGA
LOC_Os05g40780
Os.39887.1.S1_at--799--6191Chr05:23824878..23824902 (25 bp)
GAGGCGGCACTAGGCTTTTGTACCA
LOC_Os05g40780
Os.39887.1.S1_at--838--2391Chr05:23824828..23824852 (25 bp)
AAACTAATGTTCACACCCTTCATGG
LOC_Os05g40780
Os.39887.1.S1_at--784--5411Chr05:23824804..23824828 (25 bp)
GAACTTTCAACCCAGCTAGCTTTTT
LOC_Os05g40780
Os.39887.1.S1_at--1070--651Chr05:23824750..23824774 (25 bp)
ATGAATTCCTCTAGTGTGTTTGCAC
LOC_Os05g40780
Os.39887.1.S1_at--25--3851Chr05:23824726..23824750 (25 bp)
CTGATGTCACAGTTCGGCTTTTATG
LOC_Os05g40780
Os.39887.1.S1_at--663--6271Chr05:23824662..23824686 (25 bp)
GATGTCTTTTTGACAGTCTCCTGGT
LOC_Os05g40780
Os.39887.1.S1_at--932--1151Chr05:23824648..23824672 (25 bp)
AGTCTCCTGGTGACATCAGTTCATA
NONE
Target Sequence 
GTCGCGGAACTTACTGCACTTATTGTTGCCGGCACTGTCCATCGTGTTTGCATCACAACATGCTTCCTGTTTTCTGCTGG
ATTTCTCTACGAGGTTGATAAGCTCTCTGGAATGATTCTCGCGAAGAGCGAGTCTAAAGCGAGGCGGCACTAGGCTTTTG
TACCATGTCATATTTTGTAGATCAAATCAAAAACTAATGTTCACACCCTTCATGGAACTTTCAACCCAGCTAGCTTTTTC
CCCCAGGCATACGNATACCATTTGAATTATGAATTCCTCTAGTGTGTTTGCACTGATGTCACAGTTCGGCTTTTATGAGT
TTTATCTAATGAGAATGGTGTTGACTAGGTGATTTCGATGTCTTTTTGACAGTCTCCTGGTGACATCAGTTCATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.39887.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis