Browse Element(s) Details


Os.39989.1.S1_s_at

Description gb:CB658542
DB_XREF= gi:29662267
DB_XREF=OSJNEc14K08.r
CLONE=OSJNEc14K08
TID=Os.39989.1
CNT=3
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.39989 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_177924.1 (A.thaliana) GTPase, putative (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g314602/11tRNA modification GTPase TrmE family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g31410Os.6824.1.S1_at11/118+19294618..19299848Sulfate transporter 1.2, putative, expressed
LOC_Os08g31420Os.51880.1.S1_at11/118+19303216..19304628BTB/POZ domain containing protein, expressed
LOC_Os08g31430Os.51870.1.S1_at11/118+19308410..19309802BTB/POZ domain containing protein, expressed
LOC_Os08g31440Os.52625.1.S1_at10/118+19312977..19314460expressed protein
LOC_Os08g31450OsAffx.5995.1.S1_at10/118+19315445..19319160MATH domain containing protein
LOC_Os08g31450OsAffx.19006.1.S1_at5/118+19315445..19319160MATH domain containing protein
LOC_Os08g31450OsAffx.29576.5.S1_at1/118+19315445..19319160MATH domain containing protein
LOC_Os08g31460Os.39989.1.S1_s_at2/118+19323595..19327127tRNA modification GTPase TrmE family protein
LOC_Os08g31470Os.5792.1.S1_a_at11/118+19331101..19336339expressed protein
LOC_Os08g31480OsAffx.29453.1.S1_at11/118+19339110..19341220hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006400biological_processtRNA modification
GO:0003924molecular_functionGTPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.39989.1.S1_s_at--499--6151Chr08:19326763..19326787 (25 bp)
GAGGTCTTGAGCCTGTACCATCAGA
LOC_Os08g31460
Os.39989.1.S1_s_at--938--10251Chr08:19326939..19326963 (25 bp)
TTTGAACAGCTATTGAGGACCCAAC
LOC_Os08g31460
Os.39989.1.S1_s_at--420--7111Chr08:19327268..19327292 (25 bp)
GTCACCATCCGACTCATGTTTGAGA
NONE
Os.39989.1.S1_s_at--325--6591Chr08:19327335..19327359 (25 bp)
GATTGAGCTCAATGACTGGCTTCGA
NONE
Os.39989.1.S1_s_at--704--5731Chr08:19327348..19327372 (25 bp)
GACTGGCTTCGAGTTTACTAGATTT
NONE
Os.39989.1.S1_s_at--924--6531Chr08:19327368..19327392 (25 bp)
GATTTTTCACCGTTCACTTGAGCAG
NONE
Os.39989.1.S1_s_at--245--9071Chr08:19327405..19327429 (25 bp)
TGCTTGCAAAACTTGCCTCATCTAC
NONE
Os.39989.1.S1_s_at--993--10691Chr08:19327417..19327441 (25 bp)
TTGCCTCATCTACACGAGCAGTTTA
NONE
Os.39989.1.S1_s_at--1047--1391Chr08:19327471..19327495 (25 bp)
AGACTCATATGTACTGCTTCGATCA
NONE
Os.39989.1.S1_s_at--358--10631Chr08:19327488..19327512 (25 bp)
TTCGATCATCCTCACAACTGTTTTG
NONE
Os.39989.1.S1_s_at--956--2551Chr08:19327503..19327527 (25 bp)
AACTGTTTTGAATGACTGCCACAAT
NONE
Target Sequence 
GAGGTCTTGAGCCTGTACCATCAGAGGGACGGCGATGGACTGTAAATCAGAGGCAATTTGAACAGCTATTGAGGACCCAA
CANGCTTTTACTAGGCTAGAGTCATCTATCANCGANCAGTTGCCGATGGACTTCTGGACTATAGACTTGAGGGAAGCAGC
ATTGGCTCTTGCAACAATCAGCGGGGAGGATATCTCTGAAGAAGTCCTGAGCAGCATATTCAGCAANTNTTGCATTGNAA
AANGACTGGCANGCNCGNNANNNNNNNNNNTNNNGNNNANNNANTNATNNNNNTNNNNNNNCAGTCACCATCCGACTCAT
GTTTGAGACACAACAGGAGTACATGACTTAGTTTGCTCGAACATATTGATGATTGAGCTCAATGACTGGCTTCGAGTTTA
CTAGATTTTTCACCGTTCACTTGAGCAGCTGTGCTATATATGCTTGCAAAACTTGCCTCATCTACACGAGCAGTTTAGAG
GCAGTTTATAGCTCTGTAATGGAAGAAGACTCATATGTACTGCTTCGATCATCCTCACAACTGTTTTGAATGACTGCCAC
AAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.39989.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis