Browse Element(s) Details


Os.40027.1.A1_at

Description gb:CF326271
DB_XREF= gi:33800799
DB_XREF=JMT1--05-J18.g1
CLONE=JMT1--05-J18
TID=Os.40027.1
CNT=4
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.40027 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with moderate similarity to protein ref:NP_567014.1 (A.thaliana) putative protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1754010/11TBC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g17480Os.2376.1.S1_at9/113+9696304..9698958IN2-1 protein, putative, expressed
LOC_Os03g17490Os.48944.1.A1_at11/113+9700976..9704055expressed protein
LOC_Os03g17500Os.52075.1.S1_at11/113+9704342..9706595expressed protein
LOC_Os03g17510Os.54308.1.S1_at11/113+9709492..9711997pentatricopeptide, putative, expressed
LOC_Os03g17520Os.6197.1.S1_at11/113+9712198..9716610CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase family protein, expressed
LOC_Os03g17530OsAffx.25122.1.S1_at11/113+9718076..9718633hypothetical protein
LOC_Os03g17540Os.40027.1.A1_at10/113+9722817..9729772TBC domain containing protein, expressed
LOC_Os03g17540Os.27859.1.S1_at1/113+9722817..9729772TBC domain containing protein, expressed
LOC_Os03g17550Os.23533.1.S1_at11/113+9730756..9734808Serine/threonine-protein kinase RLCKVII, putative, expressed
LOC_Os03g17560OsAffx.25123.1.S1_at11/113+9736057..9738381expressed protein
LOC_Os03g17570Os.51433.1.S1_at11/113+9738594..9747740Two-component response regulator-like PRR73, putative, expressed
LOC_Os03g17570Os.8104.1.S2_a_at11/113+9738594..9747740Two-component response regulator-like PRR73, putative, expressed
LOC_Os03g17570Os.8104.1.S1_a_at11/113+9738594..9747740Two-component response regulator-like PRR73, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.40027.1.A1_at--756--6631Chr03:9727797..9727821 (25 bp)
GTTGTGCTTCTATTCTGGATCTATT
LOC_Os03g17540
Os.40027.1.A1_at--716--3091Chr03:9727869..9727893 (25 bp)
AATAGTACGGAAGCTATCCCAGCCA
LOC_Os03g17540
Os.40027.1.A1_at--708--3691Chr03:9727882..9727906 (25 bp)
CTATCCCAGCCACTGCTAGATATAA
LOC_Os03g17540
Os.40027.1.A1_at--448--2211Chr03:9727906..9727930 (25 bp)
ACAACCTGCAAAACTCGGAACTCTT
LOC_Os03g17540
Os.40027.1.A1_at--428--431Chr03:9727962..9727986 (25 bp)
ATCTAAACTTATTTGGAGCATTCCA
LOC_Os03g17540
Os.40027.1.A1_at--571--8071Chr03:9727976..9728000 (25 bp)
GGAGCATTCCATCAAAGATGTGTCT
LOC_Os03g17540
Os.40027.1.A1_at--1038--2791Chr03:9727990..9728014 (25 bp)
AAGATGTGTCTGGTTCTTTCCAACC
LOC_Os03g17540
Os.40027.1.A1_at--2--10551Chr03:9728003..9728027 (25 bp)
TTCTTTCCAACCAGATAGGCCAGCT
LOC_Os03g17540
Os.40027.1.A1_at--970--4411Chr03:9728021..9728045 (25 bp)
GCCAGCTCCCAGCATTCAAGAGTAA
LOC_Os03g17540
Os.40027.1.A1_at--284--4291NONE
CCTTTTCTCAGTTTCACAGTAAAAT
NONE
Os.40027.1.A1_at--1017--7811Chr03:9728122..9728146 (25 bp)
GGTAAAGTCTTCGTCAAATTCATGC
LOC_Os03g17540
Target Sequence 
GTTGTGCTTCTATTCTGGATCTATTTATCCACATAGTTAAATTGTACAGGTATAGTTACAAAGAAGAATAGCAATAGTAC
GGAAGCTATCCCAGCCACTGCTAGATATAACAACCTGCAAAACTCGGAACTCTTAAATATAAATCGTTAAGGAGGGAATT
TCTCCATCTAAACTTATTTGGAGCATTCCATCAAAGATGTGTCTGGTTCTTTCCAACCAGATAGGCCAGCTCCCAGCATT
CAAGAGTAATTAGTTCTTTAAGAATAATTCCCCCTTTTCTCAGTTTCACAGTAAAATTTAAATAATTTTTGCATCTAAAA
TAATTGGTAAAGTCTTCGTCAAATTCATGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.40027.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis