Browse Element(s) Details


Os.40106.1.A1_s_at

Description gb:CF328544
DB_XREF= gi:33805332
DB_XREF=NACL--03-I03.b1
CLONE=NACL--03-I03
TID=Os.40106.1
CNT=3
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.40106 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_566417.1 (A.thaliana) retinoblastoma-related protein, putative (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4260011/11retinoblastoma, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g42560Os.11790.1.S1_at11/118+26767535..26771782Glycyl-tRNA synthetase, putative, expressed
LOC_Os08g42570Os.55623.1.S1_s_at11/118+26772214..26773768expressed protein
LOC_Os08g42570OsAffx.17479.1.S1_x_at11/118+26772214..26773768expressed protein
LOC_Os08g42570Os.55623.1.S1_at9/118+26772214..26773768expressed protein
LOC_Os08g42580Os.12634.1.S1_at11/118+26776238..26780786Protein kinase domain containing protein, expressed
LOC_Os08g42590Os.11632.1.S1_at11/118+26785354..26788793MtN19, putative, expressed
LOC_Os08g42600Os.40106.1.A1_s_at11/118+26789360..26795471retinoblastoma, putative, expressed
LOC_Os08g42600Os.40106.2.S1_s_at11/118+26789360..26795471retinoblastoma, putative, expressed
LOC_Os08g42610Os.11761.1.S1_at11/118+26799468..26802402PPR986-12, putative, expressed
LOC_Os08g42620Os.53626.1.S1_at11/118+26805990..26809280DHHC zinc finger domain containing protein, expressed
LOC_Os08g42630Os.55968.1.S1_at11/118+26812829..26813804expressed protein
LOC_Os08g42640Os.7498.1.S1_at11/118+26815747..26820669Zinc finger, C3HC4 type family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000082biological_processG1/S transition of mitotic cell cycle
GO:0008134molecular_functiontranscription factor binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.40106.1.A1_s_at--537--6091Chr08:26789990..26790014 (25 bp)
GAGTACTCATGCATTTCAGAGCCCC
LOC_Os08g42600
Os.40106.1.A1_s_at--421--7911Chr08:26789786..26789810 (25 bp)
GGTTGTTGCCAGAAGTCTCAGCGAT
LOC_Os08g42600
Os.40106.1.A1_s_at--526--5071Chr08:26789696..26789720 (25 bp)
GCAGCCAGACTGCTAGTTGTTTCAG
LOC_Os08g42600
Os.40106.1.A1_s_at--48--471Chr08:26789625..26789649 (25 bp)
ATCTGTTAGGTGTCAGCTGATCTAA
LOC_Os08g42600
Os.40106.1.A1_s_at--1133--10434Chr09:6150803..6150822 (20 bp)
TTAGATGTTCAGAAGCTCCATTTTC
NONE
Os.40106.1.A1_s_at--746--171Chr08:26789578..26789602 (25 bp)
ATTTTCTCTGTTTATGTTTCCTGAC
LOC_Os08g42600
Os.40106.1.A1_s_at--211--3131Chr08:26789546..26789570 (25 bp)
AATTTCCTCAGTGAGCAGCTCTTGT
LOC_Os08g42600
Os.40106.1.A1_s_at--146--1591Chr08:26789530..26789554 (25 bp)
AGCTCTTGTCTTCTGTCACATATAA
LOC_Os08g42600
Os.40106.1.A1_s_at--847--9671Chr08:26789484..26789508 (25 bp)
TAATTAACCTGCCTCACTTTACTTC
LOC_Os08g42600
Os.40106.1.A1_s_at--1152--10331Chr08:26789467..26789491 (25 bp)
TTTACTTCTGCTTTTTCTCTTTGAA
LOC_Os08g42600
Os.40106.1.A1_s_at--1063--8951Chr08:26789389..26789413 (25 bp)
TGAAATTTGGCTCTTGTCAAGCCGG
LOC_Os08g42600
Target Sequence 
GAGTACTCATGCATTTCAGAGCCCCTCCAAGGACCTTAAGGTTATAAACAACCGNCCTAAACAGTGGGAAGAAAGTCAGT
GGAAGACTGAACTTTGATGTTGTCAGTGATTTGGTTGTTGCCAGAAGTCTCAGCGATCAAAATAGCGCATCAGCAGCAGC
AACAACAGCAGATATCNCCACAAAAACACCAGTGAAATTGGAGCAGCCAGACTGCTAGTTGTTTCAGTNNTATACCACAT
CACCTGTCCAATACAACCTACTGACGGAAATGCTAATCTGTTAGGTGTCAGCTGATCTAATAGTTAGATGTTCAGAAGCT
CCATTTTCTCTGTTTATGTTTCCTGACATGGGGAAATTTCCTCAGTGAGCAGCTCTTGTCTTCTGTCACATATAAAANAG
CTGCCCTGAGACCCCCTAATTAACCTGCCTCACTTTACTTCTGCTTTTTCTCTTTGAAGAGTTGATACTACAGTCATGTA
ATGTAGTAGCAAGTTTAACAGCTTTTGTAAATGAAATTTGGCTCTTGTCAAGCCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.40106.1.A1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis