Browse Element(s) Details


Os.40181.1.S1_at

Description gb:AK111495.1
DB_XREF= gi:37988158
TID=Os.40181.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.40181 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative RAB7A protein (GTP-binding protein) (B1131B07.14), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013000E15, full insert sequence.
FL= gb:AK111495.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5170011/11Ras-related protein Rab7, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g51670Os.37243.1.S1_at11/111+30035223..30036213expressed protein
LOC_Os01g51670Os.37243.2.S1_x_at9/111+30035223..30036213expressed protein
LOC_Os01g51670Os.37243.2.S1_at1/111+30035223..30036213expressed protein
LOC_Os01g51680OsAffx.23752.1.S1_at11/111+30044626..30045193hypothetical protein
LOC_Os01g51690Os.30634.1.S1_at10/111+30047770..30049912WRKY DNA binding domain containing protein, expressed
LOC_Os01g51700Os.40181.1.S1_at11/111+30056975..30061949Ras-related protein Rab7, putative, expressed
LOC_Os01g51700Os.40181.2.S1_s_at10/111+30056975..30061949Ras-related protein Rab7, putative, expressed
LOC_Os01g51700OsAffx.11564.1.S1_at8/111+30056975..30061949Ras-related protein Rab7, putative, expressed
LOC_Os01g51710Os.27635.3.A1_x_at11/111+30063193..30066296zinc finger protein, putative, expressed
LOC_Os01g51710Os.27635.2.S1_at11/111+30063193..30066296zinc finger protein, putative, expressed
LOC_Os01g51710OsAffx.20867.1.S1_x_at2/111+30063193..30066296zinc finger protein, putative, expressed
LOC_Os01g51720OsAffx.11565.1.S1_x_at11/111+30066970..30069374expressed protein
LOC_Os01g51720OsAffx.11565.2.S1_at11/111+30066970..30069374expressed protein
LOC_Os01g51720OsAffx.11565.1.S1_at11/111+30066970..30069374expressed protein
LOC_Os01g51730NANA1+30070919..30071218hypothetical protein
LOC_Os01g51740OsAffx.11713.2.S1_at9/111+30082096..30082680hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005525molecular_functionGTP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.40181.1.S1_at--859--7991Chr01:30057258..30057282 (25 bp)
GGATGTGCATGCTAGCAGCTAGTTA
LOC_Os01g51700
Os.40181.1.S1_at--307--3391Chr01:30057243..30057267 (25 bp)
CAGCTAGTTATTGCCGTTGCAGGTT
LOC_Os01g51700
Os.40181.1.S1_at--319--4511Chr01:30057231..30057255 (25 bp)
GCCGTTGCAGGTTATGCTTACTGAT
LOC_Os01g51700
Os.40181.1.S1_at--545--6291Chr01:30057187..30057211 (25 bp)
GATGTTGTGCATTCTTTGATGTACA
LOC_Os01g51700
Os.40181.1.S1_at--509--7031Chr01:30057167..30057191 (25 bp)
GTACACTAAGGTTCCTATGCGGCCA
LOC_Os01g51700
Os.40181.1.S1_at--37--9911Chr01:30057139..30057163 (25 bp)
TACTCCCTTTTGTAGTCATTGTACG
LOC_Os01g51700
Os.40181.1.S1_at--1157--7111Chr01:30057125..30057149 (25 bp)
GTCATTGTACGATAGTTAGCCACTA
LOC_Os01g51700
Os.40181.1.S1_at--116--1691Chr01:30057108..30057132 (25 bp)
AGCCACTACTGTTTTGGCCCAAGAG
LOC_Os01g51700
Os.40181.1.S1_at--341--2791Chr01:30057088..30057112 (25 bp)
AAGAGTACTCATGCGGAGTCCTTTT
LOC_Os01g51700
Os.40181.1.S1_at--428--7231Chr01:30057071..30057095 (25 bp)
GTCCTTTTCCTCCAATTGGGCAATA
LOC_Os01g51700
Os.40181.1.S1_at--480--8211Chr01:30057022..30057046 (25 bp)
GGAATAATGCCCTATCTGCTGTTTA
LOC_Os01g51700
Target Sequence 
GGATGTGCATGCTAGCAGCTAGTTATTGCCGTTGCAGGTTATGCTTACTGATTGTGATATTTTTTTGAAGTGATGTTGTG
CATTCTTTGATGTACACTAAGGTTCCTATGCGGCCATTCTACTCCCTTTTGTAGTCATTGTACGATAGTTAGCCACTACT
GTTTTGGCCCAAGAGTACTCATGCGGAGTCCTTTTCCTCCAATTGGGCAATAAGAATGTACAGAGGCTGATAATTTGGAA
TAATGCCCTATCTGCTGTTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.40181.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis