Browse Element(s) Details


Os.40235.1.S1_at

Description gb:CF332193
DB_XREF= gi:33812610
DB_XREF=NACL--08-J17.g1
CLONE=NACL--08-J17
TID=Os.40235.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.40235 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4417011/11hypothetical protein
LOC_Os09g016002/11expressed protein
LOC_Os01g649201/11nuclear matrix protein 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g44130OsAffx.9099.1.S1_x_at10/111+25618186..25624920Aspartic proteinase oryzasin-1 precursor, putative, expressed
LOC_Os01g44140NANA1+25628529..25629251hypothetical protein
LOC_Os01g44150OsAffx.13786.1.S1_x_at2/111+25630989..25636728retrotransposon protein, putative, unclassified
LOC_Os01g44150OsAffx.22699.1.S1_x_at2/111+25630989..25636728retrotransposon protein, putative, unclassified
LOC_Os01g44150Os.52561.1.S1_x_at1/111+25630989..25636728retrotransposon protein, putative, unclassified
LOC_Os01g44150Os.52561.1.S1_at1/111+25630989..25636728retrotransposon protein, putative, unclassified
LOC_Os01g44160OsAffx.23654.1.S1_at8/111+25639254..25639640hypothetical protein
LOC_Os01g44170Os.40235.1.S1_at11/111+25643963..25650348hypothetical protein
LOC_Os01g44170Os.25526.1.S1_at1/111+25643963..25650348hypothetical protein
LOC_Os01g44180Os.51948.1.S1_at2/111+25652950..25653553hypothetical protein
LOC_Os01g44190NANA1+25657787..25658107expressed protein
LOC_Os01g44200Os.31613.2.S1_at9/111+25663424..25673267hypothetical protein
LOC_Os01g44200Os.31613.2.S1_x_at6/111+25663424..25673267hypothetical protein
LOC_Os01g44200Os.41174.1.S1_at4/111+25663424..25673267hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.40235.1.S1_at--368--4871Chr01:25647695..25647719 (25 bp)
GCTTTCCCTTGCTCTTTGCCTGTCG
LOC_Os01g44170
Os.40235.1.S1_at--500--3751Chr01:25648353..25648377 (25 bp)
CTCTCTTGTTCGGAAGCAGAAAGCA
LOC_Os01g44170
Os.40235.1.S1_at--1018--6711Chr01:25648360..25648384 (25 bp)
GTTCGGAAGCAGAAAGCACTTGCCA
LOC_Os01g44170
Os.40235.1.S1_at--514--8751Chr01:25648618..25648642 (25 bp)
TGTACTGATTGGAAGCTTGCTGTCT
LOC_Os01g44170
Os.40235.1.S1_at--198--8191Chr01:25648628..25648652 (25 bp)
GGAAGCTTGCTGTCTACTAATGTGA
LOC_Os01g44170
Os.40235.1.S1_at--11--4931Chr01:25648632..25648656 (25 bp)
GCTTGCTGTCTACTAATGTGATCAT
LOC_Os01g44170
Os.40235.1.S1_at--131--2992Chr09:423520..423540 (21 bp)
AATGTGATCATGTCTTGTAAACAAA
LOC_Os09g01600
Os.40235.1.S1_at--371--712Chr01:25648670..25648694 (25 bp)
ATGATCTATTTGTTGCTCATTTCAA
LOC_Os01g44170
Os.40235.1.S1_at--171--6811Chr01:25648706..25648730 (25 bp)
GTTTTGTAATATCACACCATGGGTA
LOC_Os01g44170
Os.40235.1.S1_at--313--9692Chr09:423587..423611 (25 bp)
TCACACCATGGGTACTTTTATGCTT
LOC_Os09g01600
Os.40235.1.S1_at--829--7671Chr01:25648726..25648750 (25 bp)
GGGTACTTTTATGCTTTATTACTGA
LOC_Os01g44170
Target Sequence 
GCTTTCCCTTGCTCTTTGCCTGTCGATCCCCCATCTGCCCCTTTTNTAGCAGTTGATGAAGCTCCCGTAACTGAAGAAGA
ACCACCAANCAGTTTCCATAATTGATGTATTNTGAGACTGATTTCTCTTTCAAGGATGCCAACAAACTGTGCTCTCTTGT
TCGGAAGCAGAAAGCACTTGCCAAAAAGAGAAGGAAATGGCTGCGGTCTNTGATTCCAAGGGAAGACGGTNTCATCAAAC
CTATCAAACGACCCAAGTTTNTAAAAGATGCGCAAGTGCACCATNTACACCATTNTTGNGGGTTTCAAATTGTACTGATT
GGAAGCTTGCTGTCTACTAATGTGATCATGTCTTGTAAACAAATGATCTATTTGTTGCTCATTTCAAAATATTGAATTGT
TTTGTAATATCACACCATGGGTACTTTTATGCTTTATTACTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.40235.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis