Browse Element(s) Details


Os.40386.1.S1_at

Description gb:CF333570
DB_XREF= gi:33815433
DB_XREF=JMT--02-I09.g1
CLONE=JMT--02-I09
TID=Os.40386.1
CNT=9
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.40386 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0011L09.6), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2560011/11expressed protein
LOC_Os10g262601/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g25570Os.46685.1.S1_x_at11/1110+12926844..12927884expressed protein
LOC_Os10g25570Os.52427.1.S1_at8/1110+12926844..12927884expressed protein
LOC_Os10g25580OsAffx.20379.1.S1_at11/1110+12929937..12930182hypothetical protein
LOC_Os10g25590Os.46684.1.S1_at5/1110+12932478..12934134Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os10g25600Os.40386.1.S1_at11/1110+12934316..12938057expressed protein
LOC_Os10g25600Os.17912.1.A1_at5/1110+12934316..12938057expressed protein
LOC_Os10g25600OsAffx.23357.2.S1_s_at2/1110+12934316..12938057expressed protein
LOC_Os10g25600OsAffx.23357.2.S1_at1/1110+12934316..12938057expressed protein
LOC_Os10g25620OsAffx.20377.1.S1_at11/1110+12939360..12941518No apical meristem protein, expressed
LOC_Os10g25620OsAffx.20377.1.S1_x_at11/1110+12939360..12941518No apical meristem protein, expressed
LOC_Os10g25620Os.17912.2.S1_x_at2/1110+12939360..12941518No apical meristem protein, expressed
LOC_Os10g25630OsAffx.18408.1.S1_at4/1110+12946408..12947550expressed protein
LOC_Os10g25630OsAffx.20377.1.S1_x_at1/1110+12946408..12947550expressed protein
LOC_Os10g25640NANA10+12947923..12949291No apical meristem protein
LOC_Os10g25660Os.46558.1.S1_at11/1110+12952831..12954237F-box domain containing protein, expressed
LOC_Os10g25670OsAffx.30530.1.S1_at11/1110+12956446..12957159expressed protein
LOC_Os10g25674Os.25167.1.S1_a_at11/1110+12958228..12960795Mps one binder kinase activator-like 1A, putative, expressed
LOC_Os10g25680Os.25167.2.S1_at9/1110+12962948..12972003F-box family protein, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.40386.1.S1_at--553--9211Chr10:12936836..12936860 (25 bp)
TCCAACCTACAATGTATCTGTTCTT
LOC_Os10g25600
Os.40386.1.S1_at--753--2231Chr10:12936844..12936868 (25 bp)
ACAATGTATCTGTTCTTTTTGGAAA
LOC_Os10g25600
Os.40386.1.S1_at--917--3311Chr10:12936992..12937432 (25 bp)
CACATAAGTGGTAGTGGCTCAGCAC
LOC_Os10g25600
Os.40386.1.S1_at--162--1013Chr10:12937460..12937680 (25 bp)
AGGATCATTCCCAGGCAACAATGAA
LOC_Os10g25600
Os.40386.1.S1_at--911--6071Chr10:12937922..12937946 (25 bp)
GAGTATTTCATCTACGAGCTTCTGA
LOC_Os10g25600
Os.40386.1.S1_at--1031--10531Chr10:12937928..12937952 (25 bp)
TTCATCTACGAGCTTCTGAATGCTA
LOC_Os10g25600
Os.40386.1.S1_at--279--9951Chr10:12937934..12937958 (25 bp)
TACGAGCTTCTGAATGCTAATGGTT
LOC_Os10g25600
Os.40386.1.S1_at--381--631Chr10:12937947..12937971 (25 bp)
ATGCTAATGGTTGTATTCCTGTTGC
LOC_Os10g25600
Os.40386.1.S1_at--533--9271Chr10:12937963..12937987 (25 bp)
TCCTGTTGCTTTGCTAATTGGGTTA
LOC_Os10g25600
Os.40386.1.S1_at--572--3791Chr10:12937995..12938019 (25 bp)
GCCCAAAATTGGTGAAAGCAAAGCA
LOC_Os10g25600
Os.40386.1.S1_at--262--5571Chr10:12938008..12938032 (25 bp)
GAAAGCAAAGCACTTTTCTGGAGCA
LOC_Os10g25600
Target Sequence 
TCCAACCTACAATGTATCTGTTCTTTTTGGAAAGAGAGATGAGCCATTACTACTAGCTTGTGCACGCCAACTTATTGAAC
ACATAAGTGGTAGTGGCTCAGCACGGTCATTGATGATATCTCTTGGTCTGAAGGATCATTCCCAGGCAACAATGAAATAT
ATTGTTTCCACCATAATTGAGAACCGCCTATGGTAATAGTTTTGCATACCGAGCTGGGATTGGAATGGCTGGGCACATAT
ATATTCACTTCATCAACATAGATGTTGACATGATTAGTGCTGAGCAATTAACACTCACCAATCTAGAATTTTGTAACTAT
GATTTCTTTGGAGTCGATGTATCACAAAGTAGTTATATAACCAAAGTTATAGCGAGAATTGCACTACTAGCTTTGATGAG
TATTTCATCTACGAGCTTCTGAATGCTAATGGTTGTATTCCTGTTGCTTTGCTAATTGGGTTAATTTGGGGCCCAAAATT
GGTGAAAGCAAAGCACTTTTCTGGAGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.40386.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis