Browse Element(s) Details


Os.40388.2.S1_s_at

Description gb:NM_194814.1
DB_XREF= gi:37530987
TID=Os.40388.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.40388 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0034A02.12), mRNA
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0034A02.12), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0529011/11tRNA/rRNA methyltransferase, putative, expressed
LOC_Os03g0111011/11RNA methyltransferase, TrmH family protein, expressed
LOC_Os06g2873011/11hypothetical protein
LOC_Os07g403908/11hypothetical protein
LOC_Os10g253003/11expressed protein
LOC_Os01g539801/11IQ calmodulin-binding motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g05250Os.21240.2.S1_at8/1110+2576663..2580782Protein kinase domain containing protein, expressed
LOC_Os10g05270OsAffx.8523.1.S1_at10/1110+2590932..2593264retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g05270OsAffx.14019.1.S1_at1/1110+2590932..2593264retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g05280NANA10+2595176..2596265retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g05290Os.46392.1.S1_s_at11/1110+2598950..2602808tRNA/rRNA methyltransferase, putative, expressed
LOC_Os10g05290Os.40388.2.S1_x_at11/1110+2598950..2602808tRNA/rRNA methyltransferase, putative, expressed
LOC_Os10g05290Os.40388.2.S1_s_at11/1110+2598950..2602808tRNA/rRNA methyltransferase, putative, expressed
LOC_Os10g05290Os.40388.1.S1_at4/1110+2598950..2602808tRNA/rRNA methyltransferase, putative, expressed
LOC_Os10g05290Os.4648.1.S1_at1/1110+2598950..2602808tRNA/rRNA methyltransferase, putative, expressed
LOC_Os10g05300OsAffx.18139.1.S1_at11/1110+2603646..2607190hypothetical protein
LOC_Os10g05309NANA10+2607958..2608341hypothetical protein
LOC_Os10g05320OsAffx.31869.5.S1_x_at11/1110+2611781..2612578retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g05320OsAffx.31869.4.S1_x_at1/1110+2611781..2612578retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g05329NANA10+2613607..2613990hypothetical protein
LOC_Os10g05340Os.46557.2.S1_x_at11/1110+2616803..2618194transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g05340Os.46557.1.S1_x_at4/1110+2616803..2618194transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g05340OsAffx.21157.1.S1_x_at3/1110+2616803..2618194transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g05360NANA10+2627496..2629346hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006396biological_processRNA processing
GO:0003723molecular_functionRNA binding
GO:0005516molecular_functioncalmodulin binding
GO:0008173molecular_functionRNA methyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.40388.2.S1_s_at--605--5614Chr10:2600689..2600713 (25 bp)
GACAAGGATTCTTTAGTGAGGAAGC
LOC_Os10g05290
Os.40388.2.S1_s_at--721--6575Chr10:2600695..2600719 (25 bp)
GATTCTTTAGTGAGGAAGCAGGCTT
LOC_Os10g05290
Os.40388.2.S1_s_at--593--9554Chr10:2600698..2600722 (25 bp)
TCTTTAGTGAGGAAGCAGGCTTTGT
LOC_Os10g05290
Os.40388.2.S1_s_at--875--934Chr10:2600707..2600731 (25 bp)
AGGAAGCAGGCTTTGTACATCTTGA
LOC_Os10g05290
Os.40388.2.S1_s_at--588--5394Chr10:2600709..2600733 (25 bp)
GAAGCAGGCTTTGTACATCTTGAGA
LOC_Os10g05290
Os.40388.2.S1_s_at--514--1534Chr10:2600711..2600735 (25 bp)
AGCAGGCTTTGTACATCTTGAGAAT
LOC_Os10g05290
Os.40388.2.S1_s_at--243--5014Chr10:2600712..2600736 (25 bp)
GCAGGCTTTGTACATCTTGAGAATA
LOC_Os10g05290
Os.40388.2.S1_s_at--283--8315Chr10:2600715..2600739 (25 bp)
GGCTTTGTACATCTTGAGAATATCA
LOC_Os10g05290
Os.40388.2.S1_s_at--127--7034Chr10:2600721..2600745 (25 bp)
GTACATCTTGAGAATATCACTAGAC
LOC_Os10g05290
Os.40388.2.S1_s_at--80--3633Chr10:2600727..2600751 (25 bp)
CTTGAGAATATCACTAGACATCTTT
LOC_Os10g05290
Os.40388.2.S1_s_at--469--4395Chr10:2600898..2600922 (25 bp)
CCAATCAGATGAAAACTGCTCAAGT
LOC_Os10g05290
Target Sequence 
GACAAGGATTCTTTAGTGAGGAAGCAGGCTTTGTACATCTTGAGAATATCACTAGACATCTTTCCCTCATCTAAGAATGA
TGCCGCTCAGCAATGCTCCAGGAAGAGGTCCGCCGCTCTGCCTGTTCAAGACAAACCAAATACTGCAATGACAAAAAGAG
AGAGGTGGGCTCAGAAAGAGGCCAGATCCCTTGGCATCGGAGAAACGAGCCAATCAGATGAAAACTGCTCAAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.40388.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis