Browse Element(s) Details


Os.40421.1.S1_at

Description gb:AK102492.1
DB_XREF= gi:32987701
TID=Os.40421.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.40421 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OJ1116_C07.3 (OJ1116_C07.3), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033094P20, full insert sequence.
FL= gb:AK102492.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g207809/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g20760OsAffx.22940.2.S1_s_at8/111+11545011..11551360SWIM zinc finger family protein
LOC_Os01g20760Os.35344.18.S1_x_at7/111+11545011..11551360SWIM zinc finger family protein
LOC_Os01g20760Os.35344.3.S1_x_at6/111+11545011..11551360SWIM zinc finger family protein
LOC_Os01g20760OsAffx.22940.3.S1_x_at6/111+11545011..11551360SWIM zinc finger family protein
LOC_Os01g20760OsAffx.22940.5.S1_x_at4/111+11545011..11551360SWIM zinc finger family protein
LOC_Os01g20760OsAffx.22940.1.S1_s_at2/111+11545011..11551360SWIM zinc finger family protein
LOC_Os01g20770OsAffx.23312.1.S1_s_at11/111+11563494..11564331hypothetical protein
LOC_Os01g20770Os.5377.2.S1_x_at1/111+11563494..11564331hypothetical protein
LOC_Os01g20780Os.40421.1.S1_at9/111+11568088..11568986expressed protein
LOC_Os01g20800NANA1+11573707..11573958hypothetical protein
LOC_Os01g20810OsAffx.11130.1.S1_at11/111+11578112..11578815hypothetical protein
LOC_Os01g20820OsAffx.22910.1.S1_at3/111+11582418..11583054hypothetical protein
LOC_Os01g20830Os.38381.1.S1_at11/111+11593565..11595186heavy metal-associated domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006869biological_processlipid transport
GO:0031225cellular_componentanchored to membrane
GO:0008289molecular_functionlipid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.40421.1.S1_at--8--8371Chr01:11568396..11568420 (25 bp)
GGCGGAGGCACCGTCATGTACACCT
LOC_Os01g20780
Os.40421.1.S1_at--1047--8351Chr01:11568465..11568489 (25 bp)
GGCGGTGGAGGCATCTACTACCCCC
LOC_Os01g20780
Os.40421.1.S1_at--602--8351Chr01:11568654..11568678 (25 bp)
GGCGTGTCGGCCATTTCGTCGGCGG
LOC_Os01g20780
Os.40421.1.S1_at--695--1971Chr01:11568728..11568752 (25 bp)
ACTGAGAATGGGATAGATCTGCTGA
LOC_Os01g20780
Os.40421.1.S1_at--331--6411NONE
GATCTGCTGAGTTAAACCGATGTTT
NONE
Os.40421.1.S1_at--1045--3771NONE
CCGATGTTTTTCTTTACACTAGGTG
NONE
Os.40421.1.S1_at--227--3651Chr01:11568777..11568801 (25 bp)
CTAGGTGGGTAATTTGATTGTGGTT
LOC_Os01g20780
Os.40421.1.S1_at--982--9511Chr01:11568841..11568865 (25 bp)
TCTCTCTTGGTGATTTATGTATCGA
LOC_Os01g20780
Os.40421.1.S1_at--1062--6531Chr01:11568852..11568876 (25 bp)
GATTTATGTATCGATCAGGTATAAG
LOC_Os01g20780
Os.40421.1.S1_at--1060--2411Chr01:11568897..11568921 (25 bp)
AAAACATGGGCAAGTAATAAGCACC
LOC_Os01g20780
Os.40421.1.S1_at--990--10011Chr01:11568944..11568968 (25 bp)
TAGATGGATCTGCTGATTAAATTTT
LOC_Os01g20780
Target Sequence 
GGCGGAGGCACCGTCATGTACACCTCGCCGCCACCTCCCTACAGCGGCGGTGGAGGCGGCAGCAGCACCGGCGGTGGAGG
CATCTACTACCCCCCGCCCACCGGTGGAGGCGGCGGCGNCGGTGGCGGCTGGCAGCAGGGCGGTGGAGGAGGCGGCGCCT
ACCCGACACCGCCGCCGCCCAACCCGTTCCTCCCCTACTTCCCATTCTACTACTACAGCCCGCCGCCGNCGTTCTACTCC
AGCGGCTCGTCTGTCGCCGGCGTGTCGGCCATTTCGTCGGCGGCGGCGGCGACATTCACGCTGCTCCTCACTGGGCTNCT
ACTGTGGTGAGAACTGAGAATGGGATAGATCTGCTGAGTTAAACCGATGTTTTTCTTTACACTAGGTGGGTAATTTGATT
GTGGTTTCNGTAATTTAATTTTTTATTTTTTATTTTTTTTNACTTCTCTCTCTTGGTGATTTATGTATCGATCAGGTATA
AGAAAAAATTGNACCNAACTGTAAAACATGGGCAAGTAATAAGCACCNAGTACAGTTGTACTACTACAAATAGATGGATC
TGCTGATTAAATTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.40421.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis