Browse Element(s) Details


Os.40427.1.A1_s_at

Description gb:AK058325.1
DB_XREF= gi:32968343
TID=Os.40427.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.40427 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-014-B10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-014-B10, full insert sequence.
FL= gb:AK058325.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0583011/11Transaldolase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g05790OsAffx.5720.1.S1_at11/118+3095669..3099096O-methyltransferase family protein, expressed
LOC_Os08g05790Os.24052.1.S1_x_at11/118+3095669..3099096O-methyltransferase family protein, expressed
LOC_Os08g05790Os.24052.1.S1_at10/118+3095669..3099096O-methyltransferase family protein, expressed
LOC_Os08g05800OsAffx.17941.1.A1_s_at11/118+3102552..3106492NB-ARC domain containing protein, expressed
LOC_Os08g05810Os.54300.1.S1_at5/118+3107628..3110952DEAD/DEAH box helicase, putative
LOC_Os08g05820OsAffx.29054.1.S1_at11/118+3113982..3119122Multicopper oxidase family protein, expressed
LOC_Os08g05820Os.23535.1.A1_at9/118+3113982..3119122Multicopper oxidase family protein, expressed
LOC_Os08g05830Os.40427.1.A1_s_at11/118+3122024..3125895Transaldolase family protein, expressed
LOC_Os08g05830Os.54032.1.S1_at11/118+3122024..3125895Transaldolase family protein, expressed
LOC_Os08g05840Os.21861.1.S1_at11/118+3130416..3136534DNA topoisomerase I, putative, expressed
LOC_Os08g05850OsAffx.5721.1.S1_s_at11/118+3139225..3141068Sm protein
LOC_Os08g05850Os.55478.1.S1_at1/118+3139225..3141068Sm protein
LOC_Os08g05860OsAffx.29055.1.S1_at11/118+3145034..3145464hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0004801molecular_functiontransaldolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.40427.1.A1_s_at--742--5251Chr08:3122977..3123001 (25 bp)
GAATCTGTCACTGATACTGACGTGA
LOC_Os08g05830
Os.40427.1.A1_s_at--266--811Chr08:3122949..3122973 (25 bp)
ATGGTTATGTCCCAAGGCTGACTCC
LOC_Os08g05830
Os.40427.1.A1_s_at--63--8951Chr08:3122931..3122955 (25 bp)
TGACTCCTGCTCTTGGCAAAACGTA
LOC_Os08g05830
Os.40427.1.A1_s_at--931--8231Chr08:3122917..3122941 (25 bp)
GGCAAAACGTACAACTTCACTGAAG
LOC_Os08g05830
Os.40427.1.A1_s_at--774--7551Chr08:3122457..3122481 (25 bp)
GGGCCAGCTGCGGAAGAACTACTTG
LOC_Os08g05830
Os.40427.1.A1_s_at--761--8451Chr08:3122370..3122394 (25 bp)
TGGCCTCCTCCGAATGTTTGAACAC
LOC_Os08g05830
Os.40427.1.A1_s_at--415--8871Chr08:3122339..3122363 (25 bp)
TGATGAGGACCAGACCATGCCACAG
LOC_Os08g05830
Os.40427.1.A1_s_at--674--1471Chr08:3122245..3122269 (25 bp)
AGAATACTTCTCTTAGCCTGTCTGT
LOC_Os08g05830
Os.40427.1.A1_s_at--367--151Chr08:3122111..3122135 (25 bp)
ATTAGCCCGTGAGATGTGTACCATG
LOC_Os08g05830
Os.40427.1.A1_s_at--323--8971Chr08:3122088..3122112 (25 bp)
TGAAATGTCACCCAAATGCTCTGCT
LOC_Os08g05830
Os.40427.1.A1_s_at--454--9091Chr08:3122072..3122096 (25 bp)
TGCTCTGCTGGATTGTTCTGAAGTC
LOC_Os08g05830
Target Sequence 
GAATCTGTCACTGATACTGACGTGAAGTATGGTTATGTCCCAAGGCTGACTCCTGCTCTTGGCAAAACGTACAACTTCAC
TGAAGAGGAGCTTGTGAAGTGGGACCAATTGAGTCTAGCAGCTGCAATGGGGCCAGCTGCGGAAGAACTACTTGCTTCTG
GGTTGGAAGGATATGTGAACCAAGCACGCCGAGTGGAGGAACTCTTCGGGAAGATCTGGCCTCCTCCGAATGTTTGAACA
CATTCTATGATGAGGACCAGACCATGCCACAGTCTTCTATTCCAAAGAATAATAACAACAGCCACGGACAGTGCTGGCCA
GCATTTGCTCGTTCCCTTCAAAGAATACTTCTCTTAGCCTGTCTGTGTTTGTACTTTGTAGTTCTCTAGCTATCTAGCAA
ATCTCACGANGACATGTCAAGAACATCTTTGTTTTCTTTTCGCAAAGATTGGATACGGATTNTCTCGAGTATTTCATTAG
CCCGTGAGATGTGTACCATGAAATGTCACCCAAATGCTCTGCTGGATTGTTCTGAAGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.40427.1.A1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis