Browse Element(s) Details


Os.41174.1.S1_at

Description gb:NM_192948.1
DB_XREF= gi:34912979
GEN=B1158C05.18
TID=Os.41174.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.41174 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) B1158C05.18 (B1158C05.18), mRNA
DEF=Oryza sativa (japonica cultivar-group) B1158C05.18 (B1158C05.18), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g442004/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g44160OsAffx.23654.1.S1_at8/111+25639254..25639640hypothetical protein
LOC_Os01g44170Os.40235.1.S1_at11/111+25643963..25650348hypothetical protein
LOC_Os01g44170Os.25526.1.S1_at1/111+25643963..25650348hypothetical protein
LOC_Os01g44180Os.51948.1.S1_at2/111+25652950..25653553hypothetical protein
LOC_Os01g44190NANA1+25657787..25658107expressed protein
LOC_Os01g44200Os.31613.2.S1_at9/111+25663424..25673267hypothetical protein
LOC_Os01g44200Os.31613.2.S1_x_at6/111+25663424..25673267hypothetical protein
LOC_Os01g44200Os.41174.1.S1_at4/111+25663424..25673267hypothetical protein
LOC_Os01g44210Os.11136.1.S1_at11/111+25677526..25678384ribosomal protein L31 containing protein, expressed
LOC_Os01g44220Os.6732.1.S1_a_at11/111+25680653..25688790Glucose-1-phosphate adenylyltransferase large subunit 1, chloroplast precursor, putative, expressed
LOC_Os01g44230Os.2350.1.S1_at10/111+25689947..25694005X1, putative, expressed
LOC_Os01g44240NANA1+25694293..25694748Zinc finger, C3HC4 type family protein
LOC_Os01g44250Os.30324.2.S1_x_at11/111+25695329..25697854YZ1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.41174.1.S1_at--107--8131Chr01:25672941..25672965 (25 bp)
GGACAGCGCGCCAACAAAAGGGTAT
LOC_Os01g44200
Os.41174.1.S1_at--615--6415Chr01:25673102..25673126 (25 bp)
GATCTATCTTCCAGAACCCATATTT
LOC_Os01g44200
Os.41174.1.S1_at--58--7831Chr01:25673133..25673157 (25 bp)
GGTCAGTTATACATCGCATTCTCAA
LOC_Os01g44200
Os.41174.1.S1_at--842--6631Chr01:25673208..25673232 (25 bp)
GTTGACCTTGCAGGGAAGAGCACCA
LOC_Os01g44200
Os.41174.1.S1_at--243--291Chr01:25674669..25674693 (25 bp)
ATAGACGGTCTTCTACGTATCTCCG
NONE
Os.41174.1.S1_at--98--6891Chr01:25674685..25674709 (25 bp)
GTATCTCCGTATCATTTATACCGTT
NONE
Os.41174.1.S1_at--1140--271Chr01:25674723..25674747 (25 bp)
ATAGTAGAAGTGTTCATCCACAACG
NONE
Os.41174.1.S1_at--881--8331Chr01:25674747..25674771 (25 bp)
GGCTGGTTAGATAACTCGCCGGCTC
NONE
Os.41174.1.S1_at--454--4471Chr01:25674764..25674788 (25 bp)
GCCGGCTCGCTGCAAAATCAACGTA
NONE
Os.41174.1.S1_at--661--6931Chr01:25674786..25674810 (25 bp)
GTAGACACACTTGCAGAAACCTTTA
NONE
Os.41174.1.S1_at--1024--2591Chr01:25674803..25674827 (25 bp)
AACCTTTAACCCATTATATGCGCTG
NONE
Target Sequence 
GGACAGCGCGCCAACAAAAGGGTATTCATCCCACGGATCCCATTGTCTCCCTCTGATGATATATCTCTTCCTTTCAAATT
CAAGAGGAAGCAATTTCCAATCCGTCTCAGTTTTGCAATGACCATAAATAAATCACAAGGACAAACTATCCCAAATGTTG
GGATCTATCTTCCAGAACCCATATTTTCACATGGTCAGTTATACATCGCATTCTCAAGGGGTGTGTCACGACAAACAACA
AGGATTTTGGCTAAGCCTAAGAAAGAGGTTGACCTTGCAGGGAAGAGCACCAGGAATATTGTCTATAAAGACATTCTTGA
CTGTAAAATAGACGGTCTTCTACGTATCTCCGTATCATTTATACCGTTGTATGTATTGTTTATAGTAGAAGTGTTCATCC
ACAACGGCTGGTTAGATAACTCGCCGGCTCGCTGCAAAATCAACGTAGACACACTTGCAGAAACCTTTAACCCATTATAT
GCGCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.41174.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis