Browse Element(s) Details


Os.41248.5.S1_x_at

Description gb:NM_192825.1
DB_XREF= gi:34912733
GEN=B1040D09.15
TID=Os.41248.5
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.41248 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0516D04.15 (P0516D04.15), mRNA
DEF=Oryza sativa (japonica cultivar-group) B1040D09.15 (B1040D09.15), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g271606/11hypothetical protein
LOC_Os05g242305/11hypothetical protein
LOC_Os02g177605/11Cytochrome P450 family protein, expressed
LOC_Os06g255205/11hypothetical protein
LOC_Os10g222905/11hypothetical protein
LOC_Os01g486505/11expressed protein
LOC_Os06g274404/11hypothetical protein
LOC_Os01g252303/11hypothetical protein
LOC_Os11g189802/11hypothetical protein
LOC_Os03g374112/11MATE efflux family protein, expressed
LOC_Os10g148891/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g064641/11CCT motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g27140NANA3+15515748..15521685retrotransposon protein, putative, unclassified
LOC_Os03g27150Os.28943.1.S1_x_at4/113+15522306..15525536retrotransposon protein, putative, unclassified
LOC_Os03g27160OsAffx.25246.1.S1_x_at9/113+15539250..15541323hypothetical protein
LOC_Os03g27160Os.41248.2.A1_at6/113+15539250..15541323hypothetical protein
LOC_Os03g27160Os.41248.5.S1_x_at6/113+15539250..15541323hypothetical protein
LOC_Os03g27170OsAffx.25247.1.S1_x_at11/113+15542231..15543689latex-abundant family protein, putative, expressed
LOC_Os03g27170OsAffx.25247.2.S1_x_at2/113+15542231..15543689latex-abundant family protein, putative, expressed
LOC_Os03g27190Os.27226.1.S1_at10/113+15546661..15550897ICE-like protease p20 domain containing protein, expressed
LOC_Os03g27200OsAffx.13071.1.S1_at7/113+15562084..15562526expressed protein
LOC_Os03g27210OsAffx.25247.2.S1_x_at10/113+15563787..15565680latex-abundant family protein, putative
LOC_Os03g27210OsAffx.25247.1.S1_x_at3/113+15563787..15565680latex-abundant family protein, putative

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Gene Ontology Classification
GO idTypeName
GO:0007623biological_processcircadian rhythm
GO:0009909biological_processregulation of flower development
GO:0045449biological_processregulation of transcription
GO:0005634cellular_componentnucleus
GO:0016020cellular_componentmembrane
GO:0003700molecular_functiontranscription factor activity
GO:0004672molecular_functionprotein kinase activity
GO:0005215molecular_functiontransporter activity
GO:0008270molecular_functionzinc ion binding
GO:0015297molecular_functionantiporter activity
GO:0016301molecular_functionkinase activity
GO:0019825molecular_functionoxygen binding
GO:0030246molecular_functioncarbohydrate binding
GO:0030528molecular_functiontranscription regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.41248.5.S1_x_at--464--815106Chr12:27103354..27103378 (25 bp)
GGAACTCTCGCGAAGTAGCGCGCGT
NONE
Os.41248.5.S1_x_at--888--81915Chr10:10842469..10842642 (25 bp)
GGAAGTAGTCGATCGCACCAGCTCG
NONE
Os.41248.5.S1_x_at--324--8471Chr01:24978231..24978255 (25 bp)
TGGCCGTACTCCCATGCCGATTAGC
NONE
Os.41248.5.S1_x_at--566--573Chr11:12520983..12521002 (20 bp)
ATGCCGATTAGCACCGCAAACCAGC
NONE
Os.41248.5.S1_x_at--727--87103Chr12:9157080..9157104 (25 bp)
AGGCCCGTAGGACTCCTATTCGGAT
NONE
Os.41248.5.S1_x_at--1039--691134Chr12:9150823..9150847 (25 bp)
GTAGGACTCCTATTCGGATCCCTAT
NONE
Os.41248.5.S1_x_at--1114--63761Chr12:9157102..9157191 (25 bp)
GATCCCTATCCGAAGTTCATATATA
NONE
Os.41248.5.S1_x_at--199--67565Chr12:18337183..18337207 (25 bp)
GTTCATATATACTCGGCTGTAACCC
NONE
Os.41248.5.S1_x_at--266--993103Chr12:9150925..9150949 (25 bp)
TATACTCGGCTGTAACCCGAAAACT
NONE
Os.41248.5.S1_x_at--517--247107Chr12:27111696..27111720 (25 bp)
AACAGCGGCCCCTAGCAGAACGTAT
NONE
Os.41248.5.S1_x_at--18--453124Chr12:6435723..6435747 (25 bp)
GCCCCTAGCAGAACGTATTGACCCA
NONE
Target Sequence 
GGAACTCTCGCGAAGTAGCGCGCGTCGATGTAGAGGAAGTAGTCGATCGCACCAGCTCGACCTTCTCCTCCTCGTGCGTT
CTCCTGGCCGTACTCCCATGCCGATTAGCACCGCAAACCAGCGGCGCCTCTACCGGATCCATCACTCGGGCCTCCAAGGC
CCGTAGGACTCCTATTCGGATCCCTATCCGAAGTTCATATATACTCGGCTGTAACCCGAAAACTCCTTTTCGGTCCACGC
GTCAACAGCGGCCCCTAGCAGAACGTATTGACCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.41248.5.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis