Browse Element(s) Details


Os.41519.1.S1_at

Description gb:NM_192389.1
DB_XREF= gi:34911861
GEN=OSJNBb0032K15.8
TID=Os.41519.1
CNT=6
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.41519 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) pherophorin - like protein (OSJNBb0032K15.8), mRNA.
PROD=pherophorin - like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4634011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g46320NANA1+26675299..26678631transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g46330Os.14491.2.S1_x_at4/111+26681581..26685281transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g46330Os.47463.1.S1_x_at4/111+26681581..26685281transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g46340Os.41519.1.S1_at11/111+26691357..26696371expressed protein
LOC_Os01g46340Os.50843.1.S1_at11/111+26691357..26696371expressed protein
LOC_Os01g46350Os.9524.1.S1_at11/111+26695246..26700949expressed protein
LOC_Os01g46350Os.9524.1.S2_at11/111+26695246..26700949expressed protein
LOC_Os01g46360OsAffx.23686.2.S1_at11/111+26704259..26705009hypothetical protein
LOC_Os01g46360OsAffx.23686.1.S1_s_at11/111+26704259..26705009hypothetical protein
LOC_Os01g46370Os.41516.1.S1_at11/111+26710443..26713872lipase class 3 family protein, putative, expressed
LOC_Os01g46370Os.51595.1.S1_at10/111+26710443..26713872lipase class 3 family protein, putative, expressed
LOC_Os01g46370OsAffx.23684.1.S1_x_at2/111+26710443..26713872lipase class 3 family protein, putative, expressed
LOC_Os01g46370Os.7172.1.S1_at1/111+26710443..26713872lipase class 3 family protein, putative, expressed
LOC_Os01g46380Os.4767.2.S1_x_at11/111+26719024..26723138Ketol-acid reductoisomerase, chloroplast precursor, putative, expressed
LOC_Os01g46380Os.21537.1.S1_x_at3/111+26719024..26723138Ketol-acid reductoisomerase, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.41519.1.S1_at--1009--9351Chr01:26693667..26693691 (25 bp)
TCGACAACGAGCTGTCGCGCCTGGT
LOC_Os01g46340
Os.41519.1.S1_at--361--5891Chr01:26693675..26693793 (25 bp)
GAGCTGTCGCGCCTGGTGGATGAGC
LOC_Os01g46340
Os.41519.1.S1_at--780--1611Chr01:26693878..26693902 (25 bp)
AGCTGGAAGTGGAGGCCTCCTCATT
LOC_Os01g46340
Os.41519.1.S1_at--867--2872Chr12:7741919..7741938 (20 bp)
AAGTGGAGGCCTCCTCATTCCGCGA
NONE
Os.41519.1.S1_at--576--3831Chr01:26693924..26693948 (25 bp)
CTGCTCCACCGCACTGAAGAAGATG
LOC_Os01g46340
Os.41519.1.S1_at--977--8531Chr01:26694080..26694104 (25 bp)
TGGAGCACGGCGTCTACAACCTCGC
LOC_Os01g46340
Os.41519.1.S1_at--339--1031Chr01:26694130..26694154 (25 bp)
AGGTACAGCCGGTTCCAGATCCCGT
LOC_Os01g46340
Os.41519.1.S1_at--297--9231Chr01:26694143..26694167 (25 bp)
TCCAGATCCCGTGCGAGTGGATGCA
LOC_Os01g46340
Os.41519.1.S1_at--747--9311Chr01:26694149..26694173 (25 bp)
TCCCGTGCGAGTGGATGCAGCCAGA
LOC_Os01g46340
Os.41519.1.S1_at--864--1091Chr01:26694158..26694182 (25 bp)
AGTGGATGCAGCCAGACACCGGCAT
LOC_Os01g46340
Os.41519.1.S1_at--97--7991Chr01:26694161..26694185 (25 bp)
GGATGCAGCCAGACACCGGCATCGT
LOC_Os01g46340
Target Sequence 
TCGACAACGAGCTGTCGCGCCTGGTGGATGAGCGCGCGGTGCTGAAGCACTTCGAGTGGCCGGAGAACAAGGAGGACGCG
CTCCGCGAGGCGGCGTTCGGCTACTGCGACCTCAAGAAGCTGGAAGTGGAGGCCTCCTCATTCCGCGACGACGCGCGCCA
GCCCTGCTCCACCGCACTGAAGAAGATGCAGGCGCTCTTCGAGAAGCTGGAGCACGGCGTCTACAACCTCGCCCGCTTCC
GGGACGGCGCCACGGGCAGGTACAGCCGGTTCCAGATCCCGTGCGAGTGGATGCAGCCAGACACCGGCATCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.41519.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis