Browse Element(s) Details


Os.41653.1.S1_x_at

Description gb:NM_192159.1
DB_XREF= gi:34911401
GEN=P0034C09.32
TID=Os.41653.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.41653 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) similar to phosphatidic acid phosphatase beta (P0034C09.32), mRNA.
PROD=similar to phosphatidic acid phosphatase beta
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4982011/11Lipid phosphate phosphatase 2, putative, expressed
LOC_Os07g485902/11hypothetical protein
LOC_Os07g432001/11retrotransposon protein, putative, LINE subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g49760Os.33553.2.S1_x_at11/111+28904947..28910543expressed protein
LOC_Os01g49760Os.33553.1.S1_at11/111+28904947..28910543expressed protein
LOC_Os01g49770Os.7556.1.S1_x_at11/111+28909690..28913374Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g49770Os.45918.1.S1_x_at11/111+28909690..28913374Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g49770Os.7556.1.S1_at11/111+28909690..28913374Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g49780NANA1+28916796..28917296hypothetical protein
LOC_Os01g49790NANA1+28921794..28922069hypothetical protein
LOC_Os01g49800OsAffx.11536.1.S1_at11/111+28923828..28924902hypothetical protein
LOC_Os01g49810OsAffx.23731.1.S1_at11/111+28926142..28927092hypothetical protein
LOC_Os01g49820Os.41653.1.S1_x_at11/111+28931910..28935061Lipid phosphate phosphatase 2, putative, expressed
LOC_Os01g49820Os.41653.1.S1_at10/111+28931910..28935061Lipid phosphate phosphatase 2, putative, expressed
LOC_Os01g49820Os.20321.1.S1_at10/111+28931910..28935061Lipid phosphate phosphatase 2, putative, expressed
LOC_Os01g49830Os.8019.1.S1_at11/111+28946388..28947953DNA-binding protein RAV1, putative, expressed
LOC_Os01g49840OsAffx.23732.1.S1_at11/111+28949350..28949637hypothetical protein
LOC_Os01g49849NANA1+28952420..28952696NA
LOC_Os01g49860OsAffx.11537.1.S1_at11/111+28956419..28957326hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006644biological_processphospholipid metabolism
GO:0006950biological_processresponse to stress
GO:0009738biological_processabscisic acid mediated signaling
GO:0005887cellular_componentintegral to plasma membrane
GO:0008195molecular_functionphosphatidate phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.41653.1.S1_x_at--107--1351Chr01:28933195..28933219 (25 bp)
AGAGTTTTCCGAGTGGCCATACTTC
LOC_Os01g49820
Os.41653.1.S1_x_at--596--8451Chr01:28933424..28933448 (25 bp)
TGGCCTTGGTTTCCTGTCATGGTAT
LOC_Os01g49820
Os.41653.1.S1_x_at--4--3511Chr01:28933441..28933540 (25 bp)
CATGGTATCTGGCTGCCTTGGTTGC
LOC_Os01g49820
Os.41653.1.S1_x_at--95--4331Chr01:28933531..28933555 (25 bp)
CCTTGGTTGCTGTTTCTCGGGTAGA
LOC_Os01g49820
Os.41653.1.S1_x_at--894--8211Chr01:28933593..28933648 (25 bp)
GGAATTTTGGATTATACCTCGCAAC
LOC_Os01g49820
Os.41653.1.S1_x_at--386--6631Chr01:28933725..28933749 (25 bp)
GTTGGTGGTTTCTTCATTTTGCTAC
LOC_Os01g49820
Os.41653.1.S1_x_at--944--9931Chr01:28933747..28933771 (25 bp)
TACCTCCAATTTTTTCCAATGCCAT
LOC_Os01g49820
Os.41653.1.S1_x_at--49--7531Chr01:28934739..28934763 (25 bp)
GTGGAAAATACTGGCCTCTGTGTCT
LOC_Os01g49820
Os.41653.1.S1_x_at--259--9791Chr01:28934772..28934796 (25 bp)
TAAGAAGGGACTCTGCACCCTGATT
LOC_Os01g49820
Os.41653.1.S1_x_at--610--1813Chr07:29088813..29088837 (25 bp)
ACCCTGATTCTACTCATCGTATGGG
LOC_Os07g48590
Os.41653.1.S1_x_at--216--3253Chr07:29088886..29088910 (25 bp)
CAACCTCGTATCTCCTTTCAAAGAT
LOC_Os07g48590
Target Sequence 
AGAGTTTTCCGAGTGGCCATACTTCTTGGTCTTTTGCTGGCCTTGGTTTCCTGTCATGGTATCTGGCTGCCTTGGTTGCT
GTTTCTCGGGTAGATGACTATTGGCATCATTGGCAAGATGTGTTCACCGGTGGAATTTTGGATTATACCTCGCAACAAGT
AAAGGAGGGTTGGTGGTTTCTTCATTTTGCTACCTCCAATTTTTTCCAATGCCATCTGATGAAAACGGTATACGAGAAGG
ATTTGAAACCTCGTTGCGACATGGGTAGGGTTTCACCAGCTAGAACTCCGACGCTGGGGGTGGTGCAACCGGTCAAAGAT
TGGTGGAAAATACTGGCCTCTGTGTCTGGCGTCCCTAAGAAGGGACTCTGCACCCTGATTCTACTCATCGTATGGGAAGT
TTGGAAGGTGCGAAATAGGAGGATATTTGATTATAAGGAAGCCACAACCTCGTATCTCCTTTCAAAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.41653.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis