Browse Element(s) Details


Os.41694.1.S1_at

Description gb:NM_192082.1
DB_XREF= gi:34911247
GEN=P0445E10.22
TID=Os.41694.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.41694 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0445E10.22 (P0445E10.22), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0445E10.22 (P0445E10.22), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g491208/11MATE efflux family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g49080OsAffx.11525.1.S1_at7/111+28535960..28537802hypothetical protein
LOC_Os01g49080OsAffx.29394.1.S1_s_at1/111+28535960..28537802hypothetical protein
LOC_Os01g49090NANA1+28545305..28547063hypothetical protein
LOC_Os01g49110Os.53602.1.S1_at11/111+28550877..28561702protein prenyltransferase alpha subunit, putative, expressed
LOC_Os01g49110Os.33918.1.S1_x_at11/111+28550877..28561702protein prenyltransferase alpha subunit, putative, expressed
LOC_Os01g49110Os.41701.1.S1_x_at3/111+28550877..28561702protein prenyltransferase alpha subunit, putative, expressed
LOC_Os01g49120Os.14869.1.S1_at11/111+28561908..28565479MATE efflux family protein, expressed
LOC_Os01g49120Os.41694.1.S1_at8/111+28561908..28565479MATE efflux family protein, expressed
LOC_Os01g49130NANA1+28566917..28567405hypothetical protein
LOC_Os01g49140OsAffx.23722.1.S1_at8/111+28568614..28569233expressed protein
LOC_Os01g49150OsAffx.23723.2.S1_at10/111+28569825..28574144Anti-silencing protein, ASF1-like containing protein, expressed
LOC_Os01g49150OsAffx.23723.1.S1_at10/111+28569825..28574144Anti-silencing protein, ASF1-like containing protein, expressed
LOC_Os01g49160Os.4901.1.S1_at11/111+28576998..28578364Myb-like DNA-binding domain containing protein, expressed
LOC_Os01g49180OsAffx.21494.1.S1_x_at11/111+28588263..28599915DNA ligase I, ATP-dependent family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
GO:0005215molecular_functiontransporter activity
GO:0015297molecular_functionantiporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.41694.1.S1_at--290--8631Chr01:28563159..28563247 (25 bp)
TGGTGGAAGCTTTTGTAAATTCAAT
LOC_Os01g49120
Os.41694.1.S1_at--174--6811Chr01:28563134..28563158 (25 bp)
GTTTTAATGAATAGCACACGAGTAG
LOC_Os01g49120
Os.41694.1.S1_at--349--2551Chr01:28563015..28563039 (25 bp)
AACTCTGTTAGCATCACGGCGACTC
LOC_Os01g49120
Os.41694.1.S1_at--426--9411Chr01:28562950..28562974 (25 bp)
TCGTCGCGATGATGGTTCCATTGGT
LOC_Os01g49120
Os.41694.1.S1_at--935--8571Chr01:28562938..28562962 (25 bp)
TGGTTCCATTGGTTTGCATCACTGT
LOC_Os01g49120
Os.41694.1.S1_at--552--7871Chr01:28562928..28562952 (25 bp)
GGTTTGCATCACTGTGGTTACTGAT
LOC_Os01g49120
Os.41694.1.S1_at--401--3831Chr01:28562466..28562490 (25 bp)
CTGCTATCACATTTTTCACCAACTG
LOC_Os01g49120
Os.41694.1.S1_at--3--371Chr01:28562461..28562485 (25 bp)
ATCACATTTTTCACCAACTGGCAAA
LOC_Os01g49120
Os.41694.1.S1_at--226--1411Chr01:28561868..28561892 (25 bp)
AGACTACATGTTTAGGGCCTGCGCA
NONE
Os.41694.1.S1_at--224--10451Chr01:28561857..28561881 (25 bp)
TTAGGGCCTGCGCAGCCGGCACAAA
NONE
Os.41694.1.S1_at--740--2391Chr01:28561835..28561859 (25 bp)
AAACAGTGCCCCACTGAGTACGCAG
NONE
Target Sequence 
TGGTGGAAGCTTTTGTAAATTCAATGTTTTAATGAATAGCACACGAGTAGCAAACGAACTGGGTGCTGGGAACCCTGAAG
GAGCTCGTTCAGCTGTCTATGTTGTGCTGTCAGTTGCAGTGACAGAGGCACTTATAGTATGTGGAACTCTGTTAGCATCA
CGGCGACTCCTGGGTCGTGCATACAGCAGTGAGGAGGAGGTCATCTCTTTCGTCGCGATGATGGTTCCATTGGTTTGCAT
CACTGTGGTTACTGATGGTCTACAAGGAGTTATGTCAGGTATTGCTCGAGGTTGTGGATGGCAACATTTGGGCGCGTACG
TCAACCTCGGCTCATTCTATTTGCTCGGAATTCCAATGGCGATCCTTCTTGGCTTTGTGCTACATATGGGAGCAAAAGGA
CTTTGGATGGGCATTGTCTGTGGTTCAATATCACAGATCACCCTTCTATCTGCTATCACATTTTTCACCAACTGGCAAAA
GATGGTTTCAAACAAAACAAGGATAGACTACATGTTTAGGGCCTGCGCAGCCGGCACAAACAGTGCCCCACTGAGTACGC
AG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.41694.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis