Browse Element(s) Details


Os.41896.1.S1_x_at

Description gb:NM_191697.1
DB_XREF= gi:34910477
GEN=P0456F08.14
TID=Os.41896.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.41896 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0456F08.14 (P0456F08.14), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0456F08.14 (P0456F08.14), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g513209/11amine oxidase, flavin-containing family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g51290Os.25899.1.S1_a_at11/111+29810069..29819366Protein kinase domain containing protein, expressed
LOC_Os01g51290Os.25899.2.S1_s_at11/111+29810069..29819366Protein kinase domain containing protein, expressed
LOC_Os01g51300Os.12711.1.S1_at11/111+29827969..29833800WD-40 repeat protein MSI4, putative, expressed
LOC_Os01g51310OsAffx.23744.1.S1_s_at11/111+29835190..29836268expressed protein
LOC_Os01g51320Os.41896.1.S1_x_at9/111+29840227..29841765amine oxidase, flavin-containing family protein, expressed
LOC_Os01g51320Os.41896.1.S1_at8/111+29840227..29841765amine oxidase, flavin-containing family protein, expressed
LOC_Os01g51330Os.45952.1.S1_at11/111+29848452..29849826expressed protein
LOC_Os01g51340NANA1+29852028..29853377Zinc knuckle family protein
LOC_Os01g51360Os.19771.1.S1_at11/111+29856574..29859612Lipase family protein, expressed
LOC_Os01g51370Os.52929.1.S1_x_at8/111+29861811..29862986expressed protein
LOC_Os01g51380Os.1592.1.S1_at11/111+29863554..29869256Vacuolar ATP synthase subunit B isoform 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0009911biological_processpositive regulation of flower development
GO:0016575biological_processhistone deacetylation
GO:0008131molecular_functionamine oxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.41896.1.S1_x_at--714--4911Chr01:29840717..29840741 (25 bp)
GCTTCCCGTTCCTGCACATGGCGTT
LOC_Os01g51320
Os.41896.1.S1_x_at--44--8131Chr01:29840688..29840712 (25 bp)
GGACACGTGTCCAAGATCCCGTGGT
LOC_Os01g51320
Os.41896.1.S1_x_at--700--9211Chr01:29840679..29840703 (25 bp)
TCCAAGATCCCGTGGTGGATGCGCG
LOC_Os01g51320
Os.41896.1.S1_x_at--925--591Chr01:29840661..29840685 (25 bp)
ATGCGCGGCACGGAGTCGATCTGCC
LOC_Os01g51320
Os.41896.1.S1_x_at--170--5791Chr01:29840409..29840433 (25 bp)
GACGACCTCGATCGCATGGCCGAAC
LOC_Os01g51320
Os.41896.1.S1_x_at--69--5451Chr01:29840388..29840412 (25 bp)
GAACCGCTGCCACGTGGGCCAGACG
LOC_Os01g51320
Os.41896.1.S1_x_at--630--9151Chr01:29840261..29840285 (25 bp)
TGCGCGAGGCTAACCGGCTGCTGCA
LOC_Os01g51320
Os.41896.1.S1_x_at--500--911Chr01:29840255..29840279 (25 bp)
AGGCTAACCGGCTGCTGCAACACTA
LOC_Os01g51320
Os.41896.1.S1_x_at--892--9111Chr01:29840243..29840267 (25 bp)
TGCTGCAACACTACCGCGGCGGAGC
LOC_Os01g51320
Os.41896.1.S1_x_at--432--4691Chr01:29840173..29840249 (25 bp)
GCGGAGCGAATCACACCACTGGTGT
NONE
Os.41896.1.S1_x_at--391--4371Chr01:29838738..29838758 (21 bp)
CCACTGGTGTAAGATCCAATGCAAA
NONE
Target Sequence 
GCTTCCCGTTCCTGCACATGGCGTTCCGGGGACACGTGTCCAAGATCCCGTGGTGGATGCGCGGCACGGAGTCGATCTGC
CCCGTCCACGCGGGCTCCACCGTGGCGCTGGCGTGGTTCGCCGGCCGGGAGGCGGCGCACCTCGAGTCCCTCCCCGACGA
CGACGTCATCCGCGGGGCCCACGCCACGCTGGACTCCTTCCTCCCGGCGGCGCCACGGTGGAGGGTGAGGAGGATCAANC
GGANCGGGTGGGCCACNGACCCGCTNTTCCTCGGGTCATACAGNTACGTGGNCGTCGGATCGAGCGGCGACGACCTCGAT
CGCATGGCCGAACCGCTGCCACGTGGGCCAGACGCCGCCGCCGACGAGCGGCCGCCGTCGCCGCGGCTGCTGTTCGCCGG
CGAGGCGACGCACCGCACGCACTACTCAACGACGCACGCCGCGTACCTGAGCGGCGTGCGCGAGGCTAACCGGCTGCTGC
AACACTACCGCGGCGGAGCGAATCACACCACTGGTGTAAGATCCAATGCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.41896.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis