Browse Element(s) Details


Os.42099.1.S1_at

Description gb:NM_191251.1
DB_XREF= gi:34909585
GEN=P0046E05.27
TID=Os.42099.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.42099 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0046E05.27 (P0046E05.27), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0046E05.27 (P0046E05.27), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5485010/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g54810Os.23671.1.S1_at11/111+31850897..31853962expressed protein
LOC_Os01g54820NANA1+31856613..31859835hypothetical protein
LOC_Os01g54830OsAffx.22699.1.S1_x_at3/111+31860188..31866902retrotransposon protein, putative, unclassified
LOC_Os01g54830Os.52731.1.S1_at1/111+31860188..31866902retrotransposon protein, putative, unclassified
LOC_Os01g54830OsAffx.8201.1.S1_x_at1/111+31860188..31866902retrotransposon protein, putative, unclassified
LOC_Os01g54850Os.42099.1.S1_at10/111+31877510..31879858F-box domain containing protein, expressed
LOC_Os01g54860Os.6033.1.S1_at11/111+31879749..318836853-hydroxyisobutyryl-coenzyme A hydrolase, putative, expressed
LOC_Os01g54870Os.11498.1.S1_at11/111+31886080..3188768460S ribosomal protein L18a, putative, expressed
LOC_Os01g54870Os.9361.1.S1_s_at1/111+31886080..3188768460S ribosomal protein L18a, putative, expressed
LOC_Os01g54880Os.10227.1.S1_at11/111+31888240..31891006prkcsh-prov protein, putative, expressed
LOC_Os01g54890OsAffx.21616.1.S1_s_at11/111+31894650..31895589AP2 domain containing protein, expressed
LOC_Os01g54900Os.53935.1.S1_at11/111+31895859..31902459lipid-A-disaccharide synthase family protein, expressed
LOC_Os01g54910Os.7311.1.S1_at11/111+31902569..31910369GTP-binding protein TypA containing protein, expressed
LOC_Os01g54910Os.42095.1.S1_x_at10/111+31902569..31910369GTP-binding protein TypA containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.42099.1.S1_at--306--8211Chr01:31878331..31878355 (25 bp)
GGAAGGCATACCTGCACATCGCCAG
LOC_Os01g54850
Os.42099.1.S1_at--809--891Chr01:31878354..31878378 (25 bp)
AGGCCGCGCGTCAAACTGCAGTTCA
LOC_Os01g54850
Os.42099.1.S1_at--1081--311Chr01:31878381..31878405 (25 bp)
ATACGGCCGTTCTTGGATGCTGGCA
LOC_Os01g54850
Os.42099.1.S1_at--782--7591NONE
GGGCATGGCCATCAAGTTGTTGTCA
NONE
Os.42099.1.S1_at--973--5611Chr01:31879050..31879074 (25 bp)
GACACTCCAAACTTGGCTGTACAAT
LOC_Os01g54850
Os.42099.1.S1_at--228--331Chr01:31879089..31879113 (25 bp)
ATACTGTCAGTGAGCTTGGATTTCT
LOC_Os01g54850
Os.42099.1.S1_at--248--8991Chr01:31879141..31879165 (25 bp)
TGAAGCTGCTTGAGAGTTGCCCCAA
LOC_Os01g54850
Os.42099.1.S1_at--1134--1231Chr01:31879174..31879305 (25 bp)
AGTTGACTCTTTCGGCTGTTGATGC
LOC_Os01g54850
Os.42099.1.S1_at--839--2431Chr01:31879306..31879330 (25 bp)
AAAAGACGACACTGCATTGCCAAAT
LOC_Os01g54850
Os.42099.1.S1_at--1--5951Chr01:31879385..31879409 (25 bp)
GAGCAGCTCAAGTTTCTTGGATTCA
LOC_Os01g54850
Os.42099.1.S1_at--785--6551Chr01:31879404..31879428 (25 bp)
GATTCAGGCCTCAACGGTACCAGAA
LOC_Os01g54850
Target Sequence 
GGAAGGCATACCTGCACATCGCCAGGCCGCGCGTCAAACTGCAGTTCANGATACGGCCGTTCTTGGATGCTGGCACGGGG
TTGACCTGCCTCACGCTCAGGGGCATGGCCATCAAGTTGTTGTCATCTGAATATAAAGACACTCCAAACTTGGCTGTACA
ATTTGAAGACTTGAGAATACTGTCAGTGAGCTTGGATTTCTCAAATGAAAGAGAACTCATCTTCCTTCTGAAGCTGCTTG
AGAGTTGCCCCAACCTGCAACAGTTGACTCTTTCGGCTGTTGATGCAAAAGACGACACTGCATTGCCAAATTTTGCTGAT
CATGAGGAGAGGCTTTCAAAGTTATCATGCCTAACTAAGAGTTTGGAGCAGCTCAAGTTTCTTGGATTCAGGCCTCAACG
GTACCAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.42099.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis