Browse Element(s) Details


Os.42124.1.S1_at

Description gb:BE230287
DB_XREF= gi:8956612
DB_XREF=99AS64
CLONE=99AS64
TID=Os.42124.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.42124 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0481E12.19 (P0481E12.19), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5445011/11nuclear protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g54400Os.2135.1.S1_at11/111+31625790..31627032VQ motif family protein, expressed
LOC_Os01g54410OsAffx.11602.1.S1_at11/111+31629606..31629885hypothetical protein
LOC_Os01g54420Os.32564.1.S2_at11/111+31635092..31639733dynamin family protein, putative, expressed
LOC_Os01g54420Os.32564.1.S1_at11/111+31635092..31639733dynamin family protein, putative, expressed
LOC_Os01g54430Os.34474.2.S1_at2/111+31645119..31645936Plastocyanin-like domain containing protein
LOC_Os01g54440OsAffx.21624.1.S1_s_at11/111+31647011..31648696expressed protein
LOC_Os01g54450Os.42124.1.S1_x_at11/111+31651329..31651865nuclear protein, putative, expressed
LOC_Os01g54450Os.42124.1.S1_at11/111+31651329..31651865nuclear protein, putative, expressed
LOC_Os01g54460NANA1+31654170..31655105hypothetical protein
LOC_Os01g54470OsAffx.11605.1.S1_at11/111+31658380..31659915GDSL-like Lipase/Acylhydrolase family protein
LOC_Os01g54470Os.28229.2.S1_x_at2/111+31658380..31659915GDSL-like Lipase/Acylhydrolase family protein
LOC_Os01g54470Os.51561.1.S1_x_at1/111+31658380..31659915GDSL-like Lipase/Acylhydrolase family protein
LOC_Os01g54480Os.8233.1.S1_at11/111+31660081..31663929Protein kinase domain containing protein, expressed
LOC_Os01g54480Os.8233.1.S1_s_at11/111+31660081..31663929Protein kinase domain containing protein, expressed
LOC_Os01g54490OsAffx.9441.1.S1_at11/111+31670212..31672370Phosphatidylethanolamine-binding protein
LOC_Os01g54510Os.12746.1.S1_at11/111+31676460..31679999MAC/Perforin domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.42124.1.S1_at--498--4151Chr01:31651638..31651662 (25 bp)
CGCGCAGAGGCTACTACGAGGACGA
LOC_Os01g54450
Os.42124.1.S1_at--762--8391Chr01:31651582..31651606 (25 bp)
GGCGCGTCGTCGAGGATTGTGCCCC
LOC_Os01g54450
Os.42124.1.S1_at--297--7211Chr01:31651574..31651598 (25 bp)
GTCGAGGATTGTGCCCCCTCACGTT
LOC_Os01g54450
Os.42124.1.S1_at--380--3751Chr01:31651557..31651581 (25 bp)
CTCACGTTTACGTCGCGGCGGCGAG
LOC_Os01g54450
Os.42124.1.S1_at--341--8011Chr01:31651411..31651435 (25 bp)
GGAGGCCCCGACGAGTACTAGCTAG
LOC_Os01g54450
Os.42124.1.S1_at--1142--4511Chr01:31651407..31651431 (25 bp)
GCCCCGACGAGTACTAGCTAGTTGA
LOC_Os01g54450
Os.42124.1.S1_at--1090--1171Chr01:31651398..31651422 (25 bp)
AGTACTAGCTAGTTGAGCAGCGCGC
LOC_Os01g54450
Os.42124.1.S1_at--1039--2011Chr01:31651395..31651419 (25 bp)
ACTAGCTAGTTGAGCAGCGCGCGGC
LOC_Os01g54450
Os.42124.1.S1_at--25--4671Chr01:31651369..31651393 (25 bp)
GCGTGTTTCGTTGCATCGTGTGGAT
LOC_Os01g54450
Os.42124.1.S1_at--308--10311Chr01:31651364..31651388 (25 bp)
TTTCGTTGCATCGTGTGGATCGATC
LOC_Os01g54450
Os.42124.1.S1_at--776--10731Chr01:31651359..31651383 (25 bp)
TTGCATCGTGTGGATCGATCGAGTT
LOC_Os01g54450
Target Sequence 
CGCGCAGAGGCTACTACGAGGACGACGGCACGAGGACGGACTACTCCGCGGGCGCCGGCGCGTCGTCGAGGATTGTGCCC
CCTCACGTTTACGTCGCGGCGGCGAGGCGGGGCTCCGAGGGGAGGACGGTTGCCTCGTCGGTGTGCGTGGGGCACGGGCG
CACGCTCAAGGGCCGGGACCTCCGCGCCGTCCGCAACGCCGTGCTCCACATGACCGGATTCNTCGGCGGAGGCCCCGACG
AGTACTAGCTAGTTGAGCAGCGCGCGGCGGCGTGTTTCGTTGCATCGTGTGGATCGATCGAGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.42124.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis