Browse Element(s) Details


Os.42200.1.S1_at

Description gb:CA765468
DB_XREF= gi:27547365
DB_XREF=AF53-Rpf_07_J23_T7_086.ab1
CLONE=C0002543
TID=Os.42200.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.42200 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative promoter-binding factor-like protein (P0425G02.26), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5976010/11bZIP transcription factor family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g59710OsAffx.21655.1.S1_at11/111+34872822..34874488hypothetical protein
LOC_Os01g59720OsAffx.11669.1.S1_at11/111+34874931..34876166hypothetical protein
LOC_Os01g59730Os.18206.1.S1_at11/111+34877208..3487948460S ribosomal protein L30, putative, expressed
LOC_Os01g59740Os.7103.1.S1_at11/111+34885058..34886784expressed protein
LOC_Os01g59750OsAffx.23859.1.S1_at10/111+34887517..3489115214 kDa zinc-binding protein, putative, expressed
LOC_Os01g59760Os.42200.1.S1_at10/111+34892143..34895139bZIP transcription factor family protein, expressed
LOC_Os01g59770NANA1+34896958..34897269hypothetical protein
LOC_Os01g59780OsAffx.21654.1.S1_at11/111+34901681..34904452AP2 domain containing protein, expressed
LOC_Os01g59780OsAffx.21654.1.S1_x_at11/111+34901681..34904452AP2 domain containing protein, expressed
LOC_Os01g59790Os.12144.1.S1_a_at11/111+34907190..34910479ADP-ribosylation factor, putative, expressed
LOC_Os01g59790Os.12144.2.S1_x_at11/111+34907190..34910479ADP-ribosylation factor, putative, expressed
LOC_Os01g59800Os.21368.1.A1_at11/111+34910742..34913959Vacuolar protein sorting 36 containing protein, expressed
LOC_Os01g59819Os.55138.1.S1_x_at1/111+34915857..34929208Glycosyl hydrolase family 1 protein, expressed
LOC_Os01g59819OsAffx.20707.2.S1_x_at1/111+34915857..34929208Glycosyl hydrolase family 1 protein, expressed
LOC_Os01g59819Os.55476.1.S1_at1/111+34915857..34929208Glycosyl hydrolase family 1 protein, expressed
LOC_Os01g59819Os.51558.1.S1_x_at1/111+34915857..34929208Glycosyl hydrolase family 1 protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0006950biological_processresponse to stress
GO:0009738biological_processabscisic acid mediated signaling
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0016563molecular_functiontranscriptional activator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.42200.1.S1_at--591--1591Chr01:34894288..34894312 (25 bp)
AGCTGCCCGTTCAAGAGCCAGGAAG
LOC_Os01g59760
Os.42200.1.S1_at--315--3151Chr01:34892621..34892645 (25 bp)
AATTAATTTGCGCTGTGCCTGTACC
LOC_Os01g59760
Os.42200.1.S1_at--89--1271Chr01:34892560..34892584 (25 bp)
AGATTTCTGATCATGCCCGCAGTAT
LOC_Os01g59760
Os.42200.1.S1_at--78--10731Chr01:34892509..34892533 (25 bp)
TTGCTTGTAAGTTTTGCCTCCTGGG
LOC_Os01g59760
Os.42200.1.S1_at--45--10011Chr01:34892468..34892492 (25 bp)
TAGCTTCTTCTTGGCTTATGTCTAG
LOC_Os01g59760
Os.42200.1.S1_at--929--6951Chr01:34892394..34892418 (25 bp)
GTAGCACTGCTATCTTTCTGAGGCC
LOC_Os01g59760
Os.42200.1.S1_at--212--4451Chr01:34892372..34892396 (25 bp)
GCCTTGCTACTTTCCTAGCTAGGAG
LOC_Os01g59760
Os.42200.1.S1_at--551--7951NONE
GGATACATCTAGGTTCTCAGAGCTT
NONE
Os.42200.1.S1_at--593--331Chr01:34892304..34892328 (25 bp)
ATACTTGGTGGTGACATCGGCTGCT
LOC_Os01g59760
Os.42200.1.S1_at--229--8331Chr01:34892286..34892310 (25 bp)
GGCTGCTCTTCCATAGAACTGCAAG
LOC_Os01g59760
Os.42200.1.S1_at--123--8011Chr01:34892262..34892286 (25 bp)
GGAGGATGCAATCTTTAAGCCCAAA
LOC_Os01g59760
Target Sequence 
AGCTGCCCGTTCAAGAGCCAGGAAGCAGGCCTACACTAATGAACTTGAAAACAAGGTTTCTCGTTTAGAAGAGGAGAATG
TGAGGCTAAAGAGGCAAAAGGAGTNNGATGAATTAATTTGCGCTGTGCCTGTACCAGAACCCAAGTATCAACTCAGGAGA
ACAAGCTCCGCAGATTTCTGATCATGCCCGCAGTATTTTATTTTATAGTTTTTGAAGTGCTCTTGCTTGTAAGTTTTGCC
TCCTGGGGTTTAGAATCATTTCCTAGCTTCTTCTTGGCTTATGTCTAGCTTAGTGATTTGTATTGTGTAGATTAGCAGGA
GCCTAGTATGTGTTCTGGTAGCACTGCTATCTTTCTGAGGCCTTGCTACTTTCCTAGCTAGGAGTATGTAAATTTGCTGG
ATACATCTAGGTTCTCAGAGCTTCTTATACTTGGTGGTGACATCGGCTGCTCTTCCATAGAACTGCAAGGAGGATGCAAT
CTTTAAGCCCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.42200.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis