Browse Element(s) Details


Os.42230.1.S1_at

Description gb:AK112112.1
DB_XREF= gi:37988775
TID=Os.42230.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.42230 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-120-D02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-120-D02, full insert sequence.
FL= gb:AK112112.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5936010/11Calcium-dependent protein kinase, isoform 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g59340Os.33610.3.S1_x_at11/111+34622500..34632810D-hydantoinase family protein, expressed
LOC_Os01g59340Os.33610.3.S1_s_at11/111+34622500..34632810D-hydantoinase family protein, expressed
LOC_Os01g59340Os.40338.1.S1_at1/111+34622500..34632810D-hydantoinase family protein, expressed
LOC_Os01g59350Os.35049.1.S1_a_at10/111+34633377..34640164Transcription factor HBP-1b, putative, expressed
LOC_Os01g59360Os.42230.1.S1_at10/111+34652159..34654737Calcium-dependent protein kinase, isoform 2, putative, expressed
LOC_Os01g59370OsAffx.21870.3.S1_x_at11/111+34663142..34664220hypothetical protein
LOC_Os01g59370OsAffx.21870.2.S1_x_at11/111+34663142..34664220hypothetical protein
LOC_Os01g59390OsAffx.21870.3.S1_x_at11/111+34670389..34671469hypothetical protein
LOC_Os01g59390OsAffx.21870.2.S1_x_at11/111+34670389..34671469hypothetical protein
LOC_Os01g59400NANA1+34678229..34678708hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0006499biological_processN-terminal protein myristoylation
GO:0004685molecular_functioncalcium- and calmodulin-dependent protein kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.42230.1.S1_at--884--8251Chr01:34653803..34653827 (25 bp)
GGCACCATTACCGTCGATGAGCTGC
LOC_Os01g59360
Os.42230.1.S1_at--225--1491Chr01:34653843..34653866 (24 bp)
AGCAAGGGACCAAGCTCACGGAGGT
LOC_Os01g59360
Os.42230.1.S1_at--121--3351NONE
CACGGAGGTCGAAGTGCAGCAGCTA
NONE
Os.42230.1.S1_at--267--7611Chr01:34654026..34654050 (25 bp)
GGGAACGGAACCATCGATTACGACG
LOC_Os01g59360
Os.42230.1.S1_at--984--1311Chr01:34654091..34654115 (25 bp)
AGAGGAGCATCTTTACACCGCGTTT
LOC_Os01g59360
Os.42230.1.S1_at--1007--2151Chr01:34653798..34654252 (25 bp)
ACAGCGGCTGCATTTCGAAGGAGGA
LOC_Os01g59360
Os.42230.1.S1_at--664--2311Chr01:34654275..34654299 (25 bp)
AAAGGTCTTCTCGATGGCAGAGACA
LOC_Os01g59360
Os.42230.1.S1_at--611--5331Chr01:34654317..34654462 (25 bp)
GAAGTCGACGCCGATAACGATGGAA
LOC_Os01g59360
Os.42230.1.S1_at--443--10552Chr01:34654583..34654607 (25 bp)
TTCATCATCGATCAGTTTTGGCATC
LOC_Os01g59360
Os.42230.1.S1_at--582--211Chr01:34654615..34654639 (25 bp)
ATTTGTCACGACAGGTTGCACACAC
LOC_Os01g59360
Os.42230.1.S1_at--707--1991Chr01:34654648..34654672 (25 bp)
ACTCCAGAGGAATTGCTTGCTGCTG
LOC_Os01g59360
Target Sequence 
GGCACCATTACCGTCGATGAGCTGCGCAAAGGGCTGTCCAAGCAAGGGACCAAGCTCACGGAGGTCGAAGTGCAGCAGCT
AATGGAGGCTGCCGACGCGGACGGGAACGGAACCATCGATTACGACGAGTTCATCACAGCGACGATGCACATGAACAGGA
TGGACAGAGAGGAGCATCTTTACACCGCGTTTCAGTATTTCGACAAGGACAACAGCGGCTGCATTTCGAAGGAGGAGCTC
GAGCAAGCGCTGAGGGAGAAAGGTCTTCTCGATGGCAGAGACATCAAAGACATCATATCAGAAGTCGACGCCGATAACGA
TGGAAGGATAGACTACAGCGAGTTCGCGGCGATGATGCGGAAGGGAAACCCGGAGGCCAATCCCAAGAAGCGACGGGACG
TTGTGATATAGGAGAGGAGCTTGACAACAAAACAAAAACATGATCTTCATCATCGATCAGTTTTGGCATCGAAAAACATT
TGTCACGACAGGTTGCACACACACACACACACTCCAGAGGAATTGCTTGCTGCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.42230.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis