Browse Element(s) Details


Os.35049.1.S1_a_at

Description gb:AB051297.1
DB_XREF= gi:17025923
GEN=OsNIF4
TID=Os.35049.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.35049 (NCBI UniGene Cluster)
DEF=Oryza sativa OsNIF4 mRNA for bZIP transcription factor, complete cds.
PROD=bZIP transcription factor
FL= gb:AB051297.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5935010/11Transcription factor HBP-1b, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g59310NANA1+34609413..34609757hypothetical protein
LOC_Os01g59320Os.33610.4.S1_x_at11/111+34619926..34622423expressed protein
LOC_Os01g59320Os.33610.2.A1_at11/111+34619926..34622423expressed protein
LOC_Os01g59340Os.33610.3.S1_x_at11/111+34622500..34632810D-hydantoinase family protein, expressed
LOC_Os01g59340Os.33610.3.S1_s_at11/111+34622500..34632810D-hydantoinase family protein, expressed
LOC_Os01g59340Os.40338.1.S1_at1/111+34622500..34632810D-hydantoinase family protein, expressed
LOC_Os01g59350Os.35049.1.S1_a_at10/111+34633377..34640164Transcription factor HBP-1b, putative, expressed
LOC_Os01g59360Os.42230.1.S1_at10/111+34652159..34654737Calcium-dependent protein kinase, isoform 2, putative, expressed
LOC_Os01g59370OsAffx.21870.3.S1_x_at11/111+34663142..34664220hypothetical protein
LOC_Os01g59370OsAffx.21870.2.S1_x_at11/111+34663142..34664220hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009627biological_processsystemic acquired resistance
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0016563molecular_functiontranscriptional activator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.35049.1.S1_a_at--521--2231Chr01:34634535..34634559 (25 bp)
ACAATCCTCCCAACAGGCTGAAGAT
LOC_Os01g59350
Os.35049.1.S1_a_at--672--5111Chr01:34634489..34634513 (25 bp)
GCACTACAACAGTCGCTTGCAGAGA
LOC_Os01g59350
Os.35049.1.S1_a_at--983--1351Chr01:34634469..34634493 (25 bp)
AGAGACCCTGGCATCAGGATCTCTC
LOC_Os01g59350
Os.35049.1.S1_a_at--347--8411Chr01:34634444..34634468 (25 bp)
GGCCCTGCAGGATCTTCTGGTAATG
LOC_Os01g59350
Os.35049.1.S1_a_at--90--5531NONE
GAAAACTTCCTACGGCAGGCTGATA
NONE
Os.35049.1.S1_a_at--985--9131Chr01:34633791..34633815 (25 bp)
TGCGGCTTCAGACTCTTCAGCAAAT
LOC_Os01g59350
Os.35049.1.S1_a_at--177--2291Chr01:34633770..34633794 (25 bp)
AAATGCAGCGCATATTAACCACTCG
LOC_Os01g59350
Os.35049.1.S1_a_at--851--7091Chr01:34633742..34633766 (25 bp)
GTCAGCACGAGCTCTACTTGCAATA
LOC_Os01g59350
Os.35049.1.S1_a_at--73--8471Chr01:34633678..34633702 (25 bp)
TGGCTCGCCCGTCCAAGGGAATAAA
LOC_Os01g59350
Os.35049.1.S1_a_at--1094--3131Chr01:34633587..34633611 (25 bp)
AATTGAGGTATTCCCTACTTCCTAG
LOC_Os01g59350
Os.35049.1.S1_a_at--655--6451Chr01:34633526..34633550 (25 bp)
GATCACTATCTTTCCATGTATGTCT
LOC_Os01g59350
Target Sequence 
ACAATCCTCCCAACAGGCTGAAGATGCTCTTTCTCAAGGGATGGAAGCACTACAACAGTCGCTTGCAGAGACCCTGGCAT
CAGGATCTCTCGGCCCTGCAGGATCTTCTGGTAATGTTGCAAACTACATGGGACAAATGGCAATGGCTATGGGGAAACTT
GGTACCCTAGAAAACTTCCTACGGCAGGCTGATAATCTGCGGCTTCAGACTCTTCAGCAAATGCAGCGCATATTAACCAC
TCGCCAGTCAGCACGAGCTCTACTTGCAATAAGTGACTACTTCTCCCGGCTTCGTGCCCTGAGTTCTCTTTGGCTCGCCC
GTCCAAGGGAATAAAATAAATTGAATTGATTCGTAAGTAGGATATTGTTAGGTAATGTATCTCTAGTGTTATATCAGATA
GGAATTGAGGTATTCCCTACTTCCTAGATTCTTCACAATGTTCATGTATTGGTGACAGACTCGGATCACTATCTTTCCAT
GTATGTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.35049.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis