Browse Element(s) Details


Os.33610.2.A1_at

Description gb:AK065492.1
DB_XREF= gi:32975510
TID=Os.33610.2
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.33610 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative dihydropyrimidinase (P0702B09.7), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013021J15, full insert sequence.
FL= gb:AK065492.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5932011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g59280OsAffx.31780.2.S1_at8/111+34595533..34599269transposon protein, putative, unclassified
LOC_Os01g59280OsAffx.31780.2.S1_s_at8/111+34595533..34599269transposon protein, putative, unclassified
LOC_Os01g59280OsAffx.31780.2.S1_x_at5/111+34595533..34599269transposon protein, putative, unclassified
LOC_Os01g59280Os.38172.1.S1_x_at3/111+34595533..34599269transposon protein, putative, unclassified
LOC_Os01g59280Os.43567.1.S1_x_at3/111+34595533..34599269transposon protein, putative, unclassified
LOC_Os01g59280Os.29987.1.S1_at2/111+34595533..34599269transposon protein, putative, unclassified
LOC_Os01g59280OsAffx.31780.1.S1_at1/111+34595533..34599269transposon protein, putative, unclassified
LOC_Os01g59290OsAffx.23853.1.S1_at11/111+34601599..34602147hypothetical protein
LOC_Os01g59300OsAffx.11658.1.S1_at10/111+34604010..34607660hypothetical protein
LOC_Os01g59310NANA1+34609413..34609757hypothetical protein
LOC_Os01g59320Os.33610.4.S1_x_at11/111+34619926..34622423expressed protein
LOC_Os01g59320Os.33610.2.A1_at11/111+34619926..34622423expressed protein
LOC_Os01g59340Os.33610.3.S1_x_at11/111+34622500..34632810D-hydantoinase family protein, expressed
LOC_Os01g59340Os.33610.3.S1_s_at11/111+34622500..34632810D-hydantoinase family protein, expressed
LOC_Os01g59340Os.40338.1.S1_at1/111+34622500..34632810D-hydantoinase family protein, expressed
LOC_Os01g59350Os.35049.1.S1_a_at10/111+34633377..34640164Transcription factor HBP-1b, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33610.2.A1_at--34--3731Chr01:34620239..34620263 (25 bp)
CTCTGAAAGTCTGAAGGGTAAGTTA
LOC_Os01g59320
Os.33610.2.A1_at--813--1211Chr01:34620219..34620243 (25 bp)
AGTTACTGGTTGGTGGCGTGTGGAA
LOC_Os01g59320
Os.33610.2.A1_at--974--6291Chr01:34620191..34620215 (25 bp)
GATGAGTGAAGGGAGCTACTCTTGA
LOC_Os01g59320
Os.33610.2.A1_at--595--1071Chr01:34620182..34620206 (25 bp)
AGGGAGCTACTCTTGATTAAGTCAA
LOC_Os01g59320
Os.33610.2.A1_at--1013--2131Chr01:34620138..34620162 (25 bp)
ACAGTAGCTAGTTAAGTTGTGTCAT
LOC_Os01g59320
Os.33610.2.A1_at--836--2811Chr01:34620125..34620149 (25 bp)
AAGTTGTGTCATGTGTCCTCTTAAA
LOC_Os01g59320
Os.33610.2.A1_at--1057--7111Chr01:34620118..34620142 (25 bp)
GTCATGTGTCCTCTTAAACCAGCAA
LOC_Os01g59320
Os.33610.2.A1_at--1047--7451Chr01:34620113..34620137 (25 bp)
GTGTCCTCTTAAACCAGCAATTTCA
LOC_Os01g59320
Os.33610.2.A1_at--276--3131Chr01:34620095..34620119 (25 bp)
AATTTCAGGCTGTTACGAACGGCGG
LOC_Os01g59320
Os.33610.2.A1_at--11--9591Chr01:34620082..34620106 (25 bp)
TACGAACGGCGGATAGTTCTATCTT
LOC_Os01g59320
Os.33610.2.A1_at--931--7891Chr01:34620072..34620096 (25 bp)
GGATAGTTCTATCTTAAAGCTGGAA
LOC_Os01g59320
Target Sequence 
CTCTGAAAGTCTGAAGGGTAAGTTACTGGTTGGTGGCGTGTGGAAGGTGATGAGTGAAGGGAGCTACTCTTGATTAAGTC
AAAGATGAAAANTTTGTTGTAACAGTAGCTAGTTAAGTTGTGTCATGTGTCCTCTTAAACCAGCAATTTCAGGCTGTTAC
GAACGGCGGATAGTTCTATCTTAAAGCTGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33610.2.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis